Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_001730.1 Length=6089 Score E Sequences producing significant alignments: (Bits) Value seq2011 315 3e-82 seq4720 206 1e-49 seq7334 102 3e-18 >seq2011 Length=1498 Score = 315 bits (348), Expect = 3e-82 Identities = 233/272 (86%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 2559 CAGGCTAGTTCTGTTCTGGATATCACCGAGGAAGATTTTGACTTCCTGACTGGTGATAAG 2618 |||||| | | ||| ||||| | ||||| || ||||| || || ||||| || | || Sbjct 282 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 223 Query 2619 ATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTAGAGGCTTGTGTTTATGGA 2678 |||||||||||||||||||| ||||| |||||||| || |||||||| |||||||| Sbjct 222 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 163 Query 2679 ACGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2738 |||||||||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct 162 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 103 Query 2739 ATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCGCG 2798 |||||||||||||||||||||||||||||||| || || || ||| | ||||||||||| Sbjct 102 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCT 43 Query 2799 GAGTTTAGCGAAAACATTATTAATGGCGTCGA 2830 || |||| ||||||||||||||||||||||| Sbjct 42 GAATTTACGGAAAACATTATTAATGGCGTCGA 11 Score = 118 bits (130), Expect = 4e-23 Identities = 235/340 (69%), Gaps = 10/340 (3%) Strand=Plus/Minus Query 1352 GAAAACCCCAATGCTCTTCGTGATTATTTTAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1411 || || |||| |||| | ||||| |||||| | | ||||||| ||||| || Sbjct 1498 GATAATCCCATTGCTTTCCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 1439 Query 1412 GAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAG 1471 | || || || ||| ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 1438 GGGGGCCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 1379 Query 1472 TTTGGAGGTCAGC--ACGGTCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1529 | || | |||| | || |||||||||| || | ||||| | ||||| | |||| Sbjct 1378 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGCCACTTC 1321 Query 1530 CTTTGGGAAGTCATGACCCTAACTTCGGTCGCCCGGTACGTAATTATCGCCAGATTAACT 1589 || || || ||||||||| || ||||| | |||||| ||| |||||| |||| | Sbjct 1320 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 1262 Query 1590 CG-TTCCGTGGCATGTGGCCCTATGGCTTTAC-GCA-ACCGATAGCCGTTCGTTATCAAC 1646 | || | | |||||| ||||| |||| | | || || || ||||| || | Sbjct 1261 AGCTTGCAAAATACGTGGCCTTATGG--TTACAGTATGCCCATCGCAGTTCGCTACACGC 1204 Query 1647 ATGACGCTTATTCTCGCAAAGGTTGGTTATGGCCTGTTGA 1686 | ||||||| ||| || |||||||| ||||||||||| Sbjct 1203 AGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 1164 >seq4720 Length=582 Score = 206 bits (228), Expect = 1e-49 Identities = 256/342 (75%), Gaps = 10/342 (3%) Strand=Plus/Plus Query 2986 CGTAAAGGTGCTCGCCTCTGGTATGTAGGCGGTTCTCAGTTTTAATTAT-GGGCCTTCGG 3044 |||||||| ||||| || ||||||||||| ||| || |||||||| ||| |||||| Sbjct 204 CGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGG 263 Query 3045 GCCC---CTTAAGGATTATTAATGTCTAATGTACAAACTTCAGCTGAACGTGAAATTGTT 3101 ||| ||| ||||| | | ||||||||| | |||||| || || ||| | Sbjct 264 CCCCTTACTTGAGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCAT 323 Query 3102 GACCTCTCTCATCTTG-CTT--TTGACTGTGGCATGATTGGTCGCTTGAAAACTGTTTCA 3158 ||||| || ||||||| ||| ||| ||| | || ||||||||| | | || ||||| Sbjct 324 GACCTTTCCCATCTTGGCTTCCTTG-CTG-GTCA-GATTGGTCGTCTTATTACCATTTCA 380 Query 3159 TGGACTCCTGTTATCGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGTGCTTTGCGTCTT 3218 ||||| |||||||||||||| ||||| ||| | || || ||||| | | | |||||| Sbjct 381 ACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGATCTCCGTCTT 440 Query 3219 TCTCCTCTGCGTCGTGGTTTAGCCATTGATTCTAAGGTTGACTTTTTCACTTTCTATATT 3278 ||||| |||||||||| | || ||||| |||| || ||| |||| ||||| ||| | Sbjct 441 TCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTC 500 Query 3279 CCGCATCGTCATGTTTATGGTGATCAGTGGATTCAATTTATG 3320 || |||||||| ||||||||||| ||||||||| | || ||| Sbjct 501 CCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATG 542 >seq7334 Length=501 Score = 102 bits (112), Expect = 3e-18 Identities = 170/246 (69%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 3876 TCAGTGCCGCGATTCTTCGTGCCTGAGCATGGTGTCATGATGACTTTGATGCTGGTTCGC 3935 || |||||||| ||||| || ||||||||||| ||| | ||| | ||| ||||| Sbjct 439 TCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGT 380 Query 3936 TTCCCGCCTATCAGTCCTTTGGAGCATCATTATCTTGTTGGTCGTAATAATTTGACTTAT 3995 || ||||||| || ||| ||| || ||| | | | |||||||||| Sbjct 379 TTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTAT 320 Query 3996 ACCGACCTTGCTGGTGACCCGGCTTTGATTGGTAATTTGCCGCCGCGTGAGATTTCTTAT 4055 ||||| ||||||| ||||| | |||| ||| || |||||||||||||| |||||| Sbjct 319 ACCGATATTGCTGGCGACCCCGTTTTGTATGGCAACTTGCCGCCGCGTGAAATTTCTATG 260 Query 4056 CAGGACCTTTTCCGTGATGGTCGCCCGGGCATTAAGATTAAGGTTGCCGAGTCTATCTGG 4115 |||| |||||||| |||| || | ||| ||||| |||| ||| | ||| Sbjct 259 AAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGG 200 Query 4116 TATCGT 4121 |||||| Sbjct 199 TATCGT 194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19367634251932