Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_007817.1 Length=5486 Score E Sequences producing significant alignments: (Bits) Value seq2011 1112 0.0 seq4720 239 2e-59 seq7100 165 3e-37 seq8774 140 1e-29 >seq2011 Length=1498 Score = 1112 bits (1232), Expect = 0.0 Identities = 1159/1511 (77%), Gaps = 35/1511 (2%) Strand=Plus/Minus Query 824 GATAATCCCAATGCTCTCCGTGACTATTTCCGTGATATTGGTCGTATGGTTCTCACTGCC 883 |||||||||| |||| ||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 1498 GATAATCCCATTGCTTTCCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 1439 Query 884 GAGGGTCGTTCTGTCCATGATTCATCTTCGGACTGCTATCAGTATTTTTGTGTGCCTGAG 943 | ||| || | |||||||| | |||||||||||||||||||||||||||||| Sbjct 1438 GGGGGCCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 1379 Query 944 TATGGCACCCAGC--ACGGCCGTTTACATTTTCACGCAGTGCACCTTATGCGCACACTTC 1001 ||||| || ||| | |||||| | ||||| || || |||||| ||||||| |||||| Sbjct 1378 TATGGTAC--AGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGCCACTTC 1321 Query 1002 CTCTGGGTTCTATCGACCCTAACTTTGGCAAGCTGGTGCGTACTAATCGGCAAATAAATA 1061 || ||| | |||||||| ||||| | ||| || | | || || |||||| Sbjct 1320 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAGTTAAATA 1261 Query 1062 GCTTGCAAAATACATGGCCCTATGGTTACTCTATGCCCATCGCGGTCCGGTACTCCCAAG 1121 ||||||||||||| ||||| ||||||||| |||||||||||| || || ||| | || | Sbjct 1260 GCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAGG 1201 Query 1122 ACGCATTTTCGCGCGCTGGCTGGCTCTGGCCCGTTGATACAAAGGGCGAACCTCTTAAAG 1181 |||| ||||| || |||| ||| | ||||| |||||| | || || || || ||||||| Sbjct 1200 ACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGCCGCTTAAAG 1141 Query 1182 CTACCTCGTATATGGCTGTCGGCTTCTACGTCGCTAAATACGTTAACAAAAAATCAGATA 1241 ||||| ||||||||||| || ||||| || |||||||||||||||||||| ||||||| Sbjct 1140 CTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAATACGTTAACAAAAAGTCAGATA 1081 Query 1242 TTGACATGGCCTCTAAAGGTCTAGGGAATAAAGAATGGAACAATTCACTCAAAACCAAAA 1301 | ||| | || ||||||||||||| ||||||||||||||| ||||| |||||||| Sbjct 1080 TGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCACTAAAAACCAAGC 1021 Query 1302 TCAACCTGCTGCCCAAGAAAATTTTTCGCATCAGGATGTCTCGCAACTTCGGAATGAAGC 1361 | || || |||||||| | || | ||||| ||| ||||||||||| ||||| Sbjct 1020 TGTCGCTACTTCCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGGGATGAAAA 961 Query 1362 TGCACACAATGAGTCACCTCTCAGCGGAAACTCTAATCCAACTGACCCAAGTGGGCTACG 1421 ||| |||||||| | || || |||| |||||||||| ||| | |||| |||| Sbjct 960 TGCTCACAATGACAAATCTGTCCACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTACG 901 Query 1422 ACGTGACCCCGTTCAACAACATCTTGAAGCAGAACGCCAAGAAAGAGCTACGATTGAGGC 1481 ||| ||| ||||||||| | || |||||||||||||| || | |||| | ||||||||| Sbjct 900 ACGCGACGCCGTTCAACCAGATATTGAAGCAGAACGCAAAAAGAGAGATGAGATTGAGGC 841 Query 1482 TGGCAAAGAAATCTGTCGCCGACGTTTTGGAGGCGCAACCTGTGACGACCAATCTGCTAA 1541 ||| ||| |||| ||||||||||||| |||||||||||||||||| |||||||| | Sbjct 840 TGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACCTGTGACGACAAATCTGCTCA 781 Query 1542 AATTCATGCGCAATTTGACCCGTCAA----ATCGGAGTGTCCAACCTGCAGAGTTTTATC 1597 |||| |||||| || || | || || || || ||||||||||||||||||||| Sbjct 780 AATTTATGCGCGCTTCGA----TAAAAATGATTGGCGTATCCAACCTGCAGAGTTTTATC 725 Query 1598 GCTTCAATGACAACGAAATTAACAAGTATGGATATTTCTGATGAAACCAAAAACTACGTT 1657 ||||| ||||| ||| |||||| | ||||||||||||||| | ||||| || || Sbjct 724 GCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAAAAATTATCTT 665 Query 1658 GATACTGCAGGAATTACTGCTACTCACTTACGAATTAAATCGAAGTGGACTGCTGGTGGA 1717 |||| |||||||||||| || || ||||||||||||||||||||||||||||| ||| Sbjct 664 GATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGA 605 Query 1718 AAATGAAGAAATTCAATCTGAACTTAAAAAATTCGAGAAGCTCTTACTTCGCCACCTTTC 1777 |||||| |||||| | || ||| | ||||||||||||||||| || ||||||| Sbjct 604 AAATGAGAAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTC 545 Query 1778 GCCATCACCTGAACG-TACTGGCAAAGACTGACGCTCTCGACGAGGAAAAATACCTAAAT 1836 ||||||| || |||| | ||| |||| |||||||| | || ||||| || | || ||| Sbjct 544 GCCATCAACT-AACGATTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAAT 486 Query 1837 ATGCTAGGTGCTCTCCTCAAGGACTGGTTCCGTTACGAAGAACATTTCGTACATGGTAAA 1896 ||||| || | || ||||||||||||| | || || |||||| || ||||||| | Sbjct 485 ATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCACATTTTGTTCATGGTAGA 426 Query 1897 CAATCAATGCTTGACTTATTAAATGAACGTGGACTATTATC-----CACA---TCAACAA 1948 | || | ||||| | ||||| || |||||| || |||| | | | ||| Sbjct 425 GATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATCTGAGTCCGATGCTGTTCAA 366 Query 1949 CCAACCCAAAAGGAAATACAAAATG----AACT--CTAACGAATCTG-CTGTTGCCTTCG 2001 ||| | || ||| || | | ||| || | || | |||| | | || ||| Sbjct 365 CCA--CTAATAGGTAAGAAATCATGAGTCAAGTTACTGAACAATCCGTCCGT----TTCC 312 Query 2002 CTACTGCTCTCGCATCTATCAAGCTCATTCAGGCTTCATCTGTGCTGGACCTGACCGAAG 2061 || ||| | || ||||| ||||||||||||||||| | || |||| | ||||||| Sbjct 311 AGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAG 252 Query 2062 ACGACTTCGATTTCTTAACCCGTGACCGTGTATGGATTGCCACTGACCGCTCCCGTGCTC 2121 | || |||||||| | || || || || |||||||| ||||||||||| ||||||| Sbjct 251 ATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTC 192 Query 2122 GCCGCGCTATTGAGGCCTGCGTATATGGTACATTGGACTTTGTCGGATACCCTCGCTTTC 2181 | ||| ||||||| ||||| |||||||| |||||||||| |||||||||||||||| Sbjct 191 GTCGCTGCGTTGAGGCTTGCGTTTATGGTACGCTGGACTTTGTAGGATACCCTCGCTTTC 132 Query 2182 CTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTTAACATCC 2241 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 131 CTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTC 72 Query 2242 AGACAGCATGTCTTATTATGGAAGGCGCCGAGTTCACCGAAAATATTATCAATGGTATTG 2301 | || || ||||| || ||||||||||| || || || ||||| ||||| ||||| | | Sbjct 71 AAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCG 12 Query 2302 ACCAGCCAGTT 2312 | || |||||| Sbjct 11 AACAACCAGTT 1 >seq4720 Length=582 Score = 239 bits (264), Expect = 2e-59 Identities = 370/530 (70%), Gaps = 39/530 (7%) Strand=Plus/Plus Query 2311 TTAAGGCCGCTGAACTATTCGCTTTTACCCTGCGTGTACGCGCCGGAAACACTGACCATG 2370 |||| ||||||||| | ||||| |||||| ||||||||||||| |||||||||||| | Sbjct 17 TTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTC 76 Query 2371 TTACACATGCAGAAACTAACGTACGTGAACAATTACGTGCTCAAGGAGTAATGTAATGGC 2430 |||| | |||||| ||||| ||| || |||||||||| ||||||| |||||||| | Sbjct 77 TTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTC 136 Query 2431 TAAAGG---------------CTCTCGTC---GGCGTTCGC---CGTCCCG-----CTC- 2463 |||||| | |||| | | ||| ||| ||| || || Sbjct 137 TAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAA 196 Query 2464 ---------TAAAGGTGCTCGCCTCTGGTATGTTGGCGGCACACAATTCTAATCTTCTAG 2514 |||||| ||||| || |||||||| || || |||||| |||| | || Sbjct 197 AGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAAT--TGCAG 254 Query 2515 GGGCTTCGGCCCCTCTATTTAAGGATATAAAATGTCTAACGTTCAAACTTCCGCTGACCG 2574 |||||||||||||| || || |||||| | |||||||| |||||||| ||| || || Sbjct 255 GGGCTTCGGCCCCT-TACTTGAGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCG 313 Query 2575 CATTCCTAACGACCTTTCTCACCTCGTCTTCGAGGCTGGTAAAATCGGCCGTTTAAAAAC 2634 || || | |||||||| || || | |||| |||||| | || || ||| | | || Sbjct 314 TATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTAC 373 Query 2635 TATCTCCTGGACTCCAGTTGTCGCTGGCGACTCATTTGAAACTGAGATGGTAGGCGCTAT 2694 || || ||||| ||| ||||||||||||| || || | || || |||| | | Sbjct 374 CATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGATCT 433 Query 2695 TCGCCTTTCTCCACTCCGTCGCGGCCTTGCCGTCGACTCTCGCGTGGATATCTTCTCTTT 2754 || ||||||||| | ||||| |||||||| | |||||| || || || || |||| Sbjct 434 CCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTT 493 Query 2755 CTATATTCCGCATCGTCATATCTATGGTCAAGAATTCATTGAATTCATGA 2804 ||| | || |||||||| | |||||| || | | ||| | ||||||| Sbjct 494 TTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGA 543 >seq7100 Length=919 Score = 165 bits (182), Expect = 3e-37 Identities = 461/695 (66%), Gaps = 38/695 (5%) Strand=Plus/Minus Query 4251 CTGTCTATGATGCTTACCCTATCGCTGGTTACTATGACGCTGGCTCTTATACTGTTGAAG 4310 ||| |||||||| ||| ||| | | |||| | |||| | ||| | |||||| || | | Sbjct 864 CTGCCTATGATGTTTATCCTTTGGATGGTCGCCATGATGGTGGTTATTATACCGTCAAGG 805 Query 4311 ACTGCGCTACTATT--CCTACTCACGCTGTCTCTTCTGGCAACGATGTATATGTCGGCCT 4368 |||| | |||||| | | || | | | | | ||||| |||| ||||| || | Sbjct 804 ACTGTGTGACTATTGACGTCCTTCCCCGTACGC--CGGGCAATAATGTTTATGTTGGTTT 747 Query 4369 TATGCTTTTCTCTCGCATGTGGCCCGTTGCAAAACTATCCGGTATCGCTTCCCTTAATCA 4428 ||| ||| ||| | | ||| | | ||| ||| | | ||| || ||||| Sbjct 746 CATGGTTTGGTCTAACTTTA---CCGCTACTAAATGCCGCGGATTGGTTTCGCTGAATCA 690 Query 4429 GGTAAACAAGGAAGTAACCGTTCTCCAACCTCTTAAATAAGGT-ATTCTCTATGTTTGGT 4487 ||| | || || | | |||||| || ||||| | |||| ||| |||||||||| Sbjct 689 GGTTATTAAAGAGATTATTTGTCTCCAGCCACTTAAGTGAGGTGATT---TATGTTTGGT 633 Query 4488 GCAATCGCTGGCGGTATCGCCTCATCTCTTGCTGGCGGACTCATCAACAAAGCCTTTGGG 4547 || || ||||||||||| || || |||||||||| || ||| ||| ||||| Sbjct 632 GCTATTGCTGGCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGGA 573 Query 4548 GGCGGTCAATCCGCCTCCTCTACTGGCGTTCAAGGTGATGTCCTCGCTTC---TGACAAT 4604 ||||||||| ||| |||| |||| ||||||||||||| || ||| | | ||||| Sbjct 572 GGCGGTCAAAAAGCCGCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTACCGATAACAAT 513 Query 4605 AACGTA---ATCGGTGCTAATGATGCTGGTATCAAATCCGCTATTCAAGGCTCTAATCCA 4661 | ||| || || |||||||||||| ||||| || ||||||||||||||| Sbjct 512 ACTGTAGGCATGGG------TGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAATGTT 459 Query 4662 CCCAATGGCCAACAAGCTGCTCCCAATGCTATTTCGGGCGTTCTCGCTGACACTGGCAAA 4721 || || | | || | || | | | |||| || | | | ||| | |||| ||| Sbjct 458 CCTAACCCTGATGAGGCCGTCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAAA 399 Query 4722 GACGCCCT--AT-CTTCAAT-CA--CTGGC---GCTGGCGT---TAATAAACTTATGGAA 4769 | || || ||| | || ||||| ||| ||| | |||| | | || Sbjct 398 GGTCTTCTTGATGGTTCGTTGCAGGCTGGCACTTCTGCCGTTTCTGATAAGTTGCTTGAT 339 Query 4770 AAAATCGGACTATCT---AAAACTGCTGCTGATAAAGGCAAGGACACAAAGGATTATCTT 4826 | ||||| | || |||| ||||||||||| ||||| || ||||||||| Sbjct 338 TTGGTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTATCTT 279 Query 4827 GCTTCTGCATTCCCCGACCTCAACCCGTGGGAACGTGCTGGCGCTGGTGCTTCGTCTGCT 4886 ||| ||||| | || || | | | |||| |||||||| |||| |||||| |||||| Sbjct 278 GCTGCTGCAGTTCCTGAGCCTACTGCTTGGGCGCGTGCTGGTGCTGATGCTTCCTCTGCT 219 Query 4887 GGCATGGTTGACGCTGGCTTCCAAAACCAAAAAGA 4921 || ||||||||||| || || | || |||||||| Sbjct 218 GGTATGGTTGACGCCGGATTTGAGAATCAAAAAGA 184 >seq8774 Length=2034 Score = 140 bits (154), Expect = 1e-29 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 5058 CTCGAATATAACCAAAAAGAATCTATGTCACGCGTTGGCTCTATTCTCGAAAACACAAGC 5117 || || ||| | || || || |||| | ||||||| |||||| | |||||||| | Sbjct 54 CTTGATTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAAT 113 Query 5118 CTCACCAAACAACAACAAACTTCTGAAATTATGCGGCAGATGCTTACTCAAGCTCAAACC 5177 || |||| ||||| || ||| || |||||||| || |||||||||||||||||||| Sbjct 114 CTTTCCAAGCAACAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAACG 173 Query 5178 GCAGGTCAACATTTTACAAATGACCAAATCAAAGAACTTACACGAAAAGTTGGTGCTGAT 5237 || ||||| ||||||| ||||||||||| |||||| | || || || ||| ||||||| Sbjct 174 GCTGGTCAGTATTTTACCAATGACCAAATTAAAGAAATGACTCGCAAGGTTAGTGCTGAG 233 Query 5238 ATTGA 5242 |||| Sbjct 234 GTTGA 238 Score = 140 bits (154), Expect = 1e-29 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 5058 CTCGAATATAACCAAAAAGAATCTATGTCACGCGTTGGCTCTATTCTCGAAAACACAAGC 5117 || || ||| | || || || |||| | ||||||| |||||| | |||||||| | Sbjct 1981 CTTGATTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAAT 1922 Query 5118 CTCACCAAACAACAACAAACTTCTGAAATTATGCGGCAGATGCTTACTCAAGCTCAAACC 5177 || |||| ||||| || ||| || |||||||| || |||||||||||||||||||| Sbjct 1921 CTTTCCAAGCAACAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAACG 1862 Query 5178 GCAGGTCAACATTTTACAAATGACCAAATCAAAGAACTTACACGAAAAGTTGGTGCTGAT 5237 || ||||| ||||||| ||||||||||| |||||| | || || || ||| ||||||| Sbjct 1861 GCTGGTCAGTATTTTACCAATGACCAAATTAAAGAAATGACTCGCAAGGTTAGTGCTGAG 1802 Query 5238 ATTGA 5242 |||| Sbjct 1801 GTTGA 1797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17441478928515