Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_007821.1 Length=6068 Score E Sequences producing significant alignments: (Bits) Value seq2011 372 1e-99 seq4720 203 1e-48 seq7334 127 8e-26 >seq2011 Length=1498 Score = 372 bits (412), Expect = 1e-99 Identities = 247/274 (90%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 2581 TTCAGGCTTCCGCTGTTCTGGATATTACCGAGGAGGATTTTGATTTCCTGACTGGTGATA 2640 |||||||||| || ||| ||||| | ||||| || ||||| ||||| ||||| || | | Sbjct 284 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 225 Query 2641 AAATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTTGAGGCTTGTGTTTATG 2700 || |||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||| Sbjct 224 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 165 Query 2701 GAACACTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2760 | || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 164 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 105 Query 2761 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACGGCCTGCCTCATCATGGAAGGCG 2820 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 104 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCG 45 Query 2821 CTGAGTTTACGGAAAACATTGTTAATGGCGTCGA 2854 |||| ||||||||||||||| ||||||||||||| Sbjct 44 CTGAATTTACGGAAAACATTATTAATGGCGTCGA 11 Score = 114 bits (126), Expect = 5e-22 Identities = 231/338 (68%), Gaps = 6/338 (2%) Strand=Plus/Minus Query 1353 GAAAACCCCAATGCTCTTCGTGATTATTTCAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1412 || || |||| |||| | ||||| ||||| | | ||||||| ||||| || Sbjct 1498 GATAATCCCATTGCTTTCCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 1439 Query 1413 GAAGGTCGTTCGGTTAAGGATTCCTACAACGATTGCTATCGCTATCTTTGTGTGCCGGAG 1472 | || || || ||| ||||| || ||| ||||||| ||| |||||||||| ||| Sbjct 1438 GGGGGCCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 1379 Query 1473 TTTGGAGGTCAGC--ACGGTCGTCTTCATTGGCATGTTGTGCATATGGTGCGGACTCTTC 1530 | ||| |||| | || |||||||||| |||| ||||| | ||||| | |||| Sbjct 1378 TATGGTA--CAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGCCACTTC 1321 Query 1531 CTTTGGGAAGTTACGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1590 || || || ||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 1320 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 1262 Query 1591 CG-TTCCGTGGCATGTGGCCTTATGGCTTCACGCAACCGATAGCTGTACGCTATCAACAT 1649 | || | | |||||||||||| | || || || || || ||||| || Sbjct 1261 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 1202 Query 1650 GATGCTTATTCTCGCAAAGGTTGGTTGTGGCCTGTTGA 1687 || |||| ||| || |||||||||||||||||||| Sbjct 1201 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 1164 >seq4720 Length=582 Score = 203 bits (224), Expect = 1e-48 Identities = 249/338 (74%), Gaps = 4/338 (1%) Strand=Plus/Plus Query 3013 AAAGGCGCTCGTCTCTGGTATGTAGGCGGTTCTCAATTTTAATTAACGGGGCTTCGGCCC 3072 |||||||||||||| ||||||||||| ||| ||||||||||| ||||||||||||| Sbjct 207 AAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCC 266 Query 3073 CTA---TAAGGATTCTTAAATGTCAAACGTGCAAACTTCCGCTGAACGTATTCCTCACGA 3129 || | ||||| | | |||| || | |||||| ||| || ||||| || || || Sbjct 267 CTTACTTGAGGATAAATTA-TGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGA 325 Query 3130 CCTTTCTCATCTGGTTTTTGATGCAGGCAAAATTGGTCGTTTAAAGGTTGTTTCTTGGAC 3189 |||||| ||||| | || ||| || | ||||||||| | | |||| || Sbjct 326 CCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTAC 385 Query 3190 TCCTGTTGTTGCAGGTGATTCTTTTGAGCTTGATATGATTGGCGCTATTCGCCTTTCCCC 3249 ||| ||| | || || || || || ||| | || |||||| | | || ||||| || Sbjct 386 TCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGATCTCCGTCTTTCTCC 445 Query 3250 GCTTCGTCGTGGCCTTGCTGTTGACTCTCGTGTTGACCTGTTCACGTTTTATGTCCCTCA 3309 | ||||||||||||||| |||||||| ||| ||| | || || |||||||||||||| Sbjct 446 ATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCA 505 Query 3310 TCGTCATGTATATGGTGAGCAGTGGATTGATTTTATGA 3347 |||||| || |||||||| ||||||||| | || |||| Sbjct 506 TCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGA 543 >seq7334 Length=501 Score = 127 bits (140), Expect = 8e-26 Identities = 184/255 (72%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 3895 TAAGCATTCAGTACCGCGATTCTTCTGCCCTGAGCATGGCACTATGTTCACACTCGCATT 3954 ||||| ||| || ||||| ||||| |||||||||||||||||||| || || || | Sbjct 446 TAAGCCTTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCT 387 Query 3955 GGTCCGCTTCCCGCCGACTC--ATGAAATGGAGATGCATTACTTAGTTGGTAAAGAAGAT 4012 || || || ||||| ||| | ||| ||||| || ||| | | ||||| | | Sbjct 386 TGTTCGTTTTCCGCCTACTGCGACTAAA--GAGATTCAGTACCTTAACGCTAAAGGTGCT 329 Query 4013 TTGACTTATACTGATTTGGCTTGTGACCCTGCTTTG-ATGGCTAACTTGCCTCCTCGTGA 4071 ||||||||||| ||| | ||| | ||||| | |||| ||||| |||||||| || ||||| Sbjct 328 TTGACTTATACCGATATTGCTGGCGACCCCGTTTTGTATGGC-AACTTGCCGCCGCGTGA 270 Query 4072 GGTTAATATGTCTCAGTTCTTCCATTCTGGAAGTGCTAGTGCTAAGTTTAAGATCGCTGA 4131 || |||| | | |||| |||||| | | | ||||||||||| ||||| Sbjct 269 AATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGA 210 Query 4132 AGGTCAGTGGTATCG 4146 |||||||||||||| Sbjct 209 GGGTCAGTGGTATCG 195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19300441071808