Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_012868.1 Length=6094 Score E Sequences producing significant alignments: (Bits) Value seq2011 306 1e-79 seq4720 203 1e-48 seq7100 140 1e-29 seq7334 93.3 2e-15 >seq2011 Length=1498 Score = 306 bits (338), Expect = 1e-79 Identities = 232/274 (85%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 2557 TTCAGGCTAGCGCTGTTCTGGATATCACTGAGGAAGATTTCGACTTCCTGACTGGTGATA 2616 |||||||| || ||| ||||| | || || || |||||||| || ||||| || | | Sbjct 284 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 225 Query 2617 AGATTTGGATTGCCACCGACCGCAACCGTGCGCGTCGCTGTGTGGAGGCTTGTGTTTATG 2676 | |||||||||| || |||||| ||||| |||||||| || |||||||| ||||||| Sbjct 224 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 165 Query 2677 GAGCGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2736 | ||||||||||||| || || ||||||||||||||||||||||||||||||||||||| Sbjct 164 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 105 Query 2737 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCG 2796 |||||||||||||||||||||||||||||||||| || || || ||| | |||||||||| Sbjct 104 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCG 45 Query 2797 CGGAGTTTAGCGAAAACATTATTAATGGCGTCGA 2830 | || |||| ||||||||||||||||||||||| Sbjct 44 CTGAATTTACGGAAAACATTATTAATGGCGTCGA 11 Score = 129 bits (142), Expect = 2e-26 Identities = 234/338 (69%), Gaps = 6/338 (2%) Strand=Plus/Minus Query 1352 GAAAACCCCAATGCTCTTCGTGATTATTTTAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1411 || || |||| |||| | ||||| |||||| | | ||||||| ||||| || Sbjct 1498 GATAATCCCATTGCTTTCCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 1439 Query 1412 GAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGTTATCTTTGTGTGCCGGAG 1471 | || || || ||| ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 1438 GGGGGCCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 1379 Query 1472 TTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1529 | || | |||| | ||||||||||||| || | ||||| | ||||| | |||| Sbjct 1378 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGCCACTTC 1321 Query 1530 CTTTGGGAAGTCACGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1589 || || || ||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 1320 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 1262 Query 1590 CG-TTCCGTGGCATGTGGCCCTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAACAT 1648 | || | | |||||| ||||| | || || || || |||||||| || Sbjct 1261 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 1202 Query 1649 GACGCTTATTCTCGTAAAGGTTGGCTGTGGCCTGTTGA 1686 ||||||| ||| ||| |||||| ||||||||||||| Sbjct 1201 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 1164 >seq4720 Length=582 Score = 203 bits (224), Expect = 1e-48 Identities = 255/343 (74%), Gaps = 9/343 (3%) Strand=Plus/Plus Query 2986 CGTAAAGGTGCCCGCCTTTGGTATGTAGGCGGTTCTCAGTTTTAATTATGAGCCCTTCGG 3045 |||||||| || || |||||||||||||| ||| || |||||||| | |||||| Sbjct 204 CGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGG 263 Query 3046 GGCTCT--TTAAGGA-AAATTAAATGTCTAATGTACAAACTTCCGCTGAACGTGAAATTG 3102 | | || |||| |||||| |||||||| | |||||| ||| || ||| Sbjct 264 CCCCTTACTTGAGGATAAATTA--TGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGC 321 Query 3103 TTGACCTTTCTCATCTTGCCTT--TGACTGTGGCATGATTGGTCGTTTGAAAACTGTTTC 3160 ||||||||| ||||||| ||| | ||| | || |||||||||| | | || |||| Sbjct 322 ATGACCTTTCCCATCTTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTATTACCATTTC 379 Query 3161 ATGGACTCCTGTTATTGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGCGCTTTGCGTCT 3220 | ||||| ||||| |||||||| ||||| ||| | || || ||||||| | | ||||| Sbjct 380 AACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGATCTCCGTCT 439 Query 3221 TTCTCCTCTGCGTCGTGGTTTAGCTATTGACTCTAAGGTTGATTTTTTCACTTTCTATAT 3280 |||||| |||||||||| | ||||||||||||| || || |||| ||||| ||| | Sbjct 440 TTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGT 499 Query 3281 TCCGCATCGCCATGTTTATGGTGACCAGTGGATTCAATTTATG 3323 || ||||| || ||||||||||| ||||||||| | || ||| Sbjct 500 CCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATG 542 >seq7100 Length=919 Score = 140 bits (154), Expect = 1e-29 Identities = 193/265 (73%), Gaps = 14/265 (5%) Strand=Plus/Minus Query 5469 AGGAAAGGCAACCCGTGATTACTTGGCAGCGGCTTTCCCTGAGCTCAACCCATGGGAACG 5528 |||||||| || |||||||| | || || || | ||||||| | | |||| || Sbjct 303 AGGAAAGGATACTCGTGATTATCTTGCTGCTGCAGTTCCTGAGCCTACTGCTTGGGCGCG 244 Query 5529 TGCTGGAGCTGATGCTTCCACTGCCGGGTTAGAGTCTTCCGC------TCAGAATCAACA 5582 |||||| |||||||||||| |||| || || || | ||| | |||||||| Sbjct 243 TGCTGGTGCTGATGCTTCCTCTGCTGG--TATGGT-TGACGCCGGATTTGAGAATCAA-- 189 Query 5583 AAAAGAGATGCTTAAAATGCAACTGGATAACCAGAAGGATATTGCCAAGATGCAGA-TGA 5641 |||||| | ||||||||||||||| || ||||| || |||||| ||||||| | ||| Sbjct 188 -AAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGA 130 Query 5642 ATAACAATTTGCAGATTGCTGGCATTCAGTCCGCTACATCTCGCCAGAATACGAAGGATT 5701 ||| | ||||||||||||||||||| || || || |||||||||||||| || Sbjct 129 GACTCAAAAAG-AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACC 71 Query 5702 CTGTTTATGCCCAGAATGAGATGCT 5726 | ||||| || |||||| |||| Sbjct 70 AGGAATATGCACAAAATGAGTTGCT 46 >seq7334 Length=501 Score = 93.3 bits (102), Expect = 2e-15 Identities = 168/246 (68%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 3879 TCAGTGCCTCGATTCTTCGTGCCGGAGCATGGTGTCATGATGACTTTGATGCTGGTTCGC 3938 || ||||| || ||||| || || |||||||| ||| | ||| | ||| ||||| Sbjct 439 TCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGT 380 Query 3939 TTCCCGCCTATCAGTCCTTTGGAGCATCATTATCTTGTTGGTCGTAATAATTTGACTTAT 3998 || ||||||| || ||| ||| || ||| | | | |||||||||| Sbjct 379 TTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTAT 320 Query 3999 ACCGACCTTGCGGGTGACCCGGCTTTGATTGGTAATTTGCCGCCACGTGAGATTTCTTAT 4058 ||||| |||| || ||||| | |||| ||| || |||||||| ||||| |||||| Sbjct 319 ACCGATATTGCTGGCGACCCCGTTTTGTATGGCAACTTGCCGCCGCGTGAAATTTCTATG 260 Query 4059 CAGGATCTTTTCCGTGATGGTCGTCCGGGCATTAAGATTAAGGTTGCCGAGTCTATCTGG 4118 ||||| |||||||| |||| | || | ||| ||||| |||| ||| | ||| Sbjct 259 AAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGG 200 Query 4119 TATCGT 4124 |||||| Sbjct 199 TATCGT 194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19383632628152