Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20rostrata_20[genbank_20GCA_5F001606085.1_202016-04-04] 79,209 sequences; 1,413,032,609 total letters Query= NC_023421.1 Length=1378 Score E Sequences producing significant alignments: (Bits) Value seq3159 82.4 7e-13 seq1550 82.4 7e-13 seq1193 80.6 2e-12 seq2921 78.8 8e-12 seq2515 78.8 8e-12 >seq3159 Length=178616 Score = 82.4 bits (90), Expect = 7e-13 Identities = 60/71 (85%), Gaps = 9/71 (13%) Strand=Plus/Plus Query 1118 TGGCCCGTGCTACCTTGGAAGGCTTCCAGAAAAACCGGCTAAACCGGCTGTATGTTTGGT 1177 |||||| |||| ||||||||||||||||||| |||||||||||||||||||| Sbjct 5256 TGGCCCATGCTTCCTTGGAAGGCTTCCAGAA---------AAACCGGCTGTATGTTTGGT 5306 Query 1178 TGGTGTTTGCT 1188 ||||||||||| Sbjct 5307 TGGTGTTTGCT 5317 >seq1550 Length=234896 Score = 82.4 bits (90), Expect = 7e-13 Identities = 60/71 (85%), Gaps = 9/71 (13%) Strand=Plus/Plus Query 1118 TGGCCCGTGCTACCTTGGAAGGCTTCCAGAAAAACCGGCTAAACCGGCTGTATGTTTGGT 1177 ||||||| ||| ||||||||||||||||||| |||||||||||||||||||| Sbjct 148701 TGGCCCGCGCTTCCTTGGAAGGCTTCCAGAA---------AAACCGGCTGTATGTTTGGT 148751 Query 1178 TGGTGTTTGCT 1188 ||||||||||| Sbjct 148752 TGGTGTTTGCT 148762 >seq1193 Length=605756 Score = 80.6 bits (88), Expect = 2e-12 Identities = 62/75 (83%), Gaps = 9/75 (12%) Strand=Plus/Minus Query 1114 GGAGTGGCCCGTGCTACCTTGGAAGGCTTCCAGAAAAACCGGCTAAACCGGCTGTATGTT 1173 ||| |||||| ||| |||||||||||||||||||||||| ||||||||||| Sbjct 39845 GGAATGGCCCACGCTTCCTTGGAAGGCTTCCAGAAAAACC---------GGCTGTATGTT 39795 Query 1174 TGGTTGGTGTTTGCT 1188 ||||||||||||||| Sbjct 39794 TGGTTGGTGTTTGCT 39780 Score = 80.6 bits (88), Expect = 2e-12 Identities = 62/75 (83%), Gaps = 9/75 (12%) Strand=Plus/Minus Query 1114 GGAGTGGCCCGTGCTACCTTGGAAGGCTTCCAGAAAAACCGGCTAAACCGGCTGTATGTT 1173 ||| |||||| ||| |||||||||||||||||||||||| ||||||||||| Sbjct 45760 GGAATGGCCCACGCTTCCTTGGAAGGCTTCCAGAAAAACC---------GGCTGTATGTT 45710 Query 1174 TGGTTGGTGTTTGCT 1188 ||||||||||||||| Sbjct 45709 TGGTTGGTGTTTGCT 45695 >seq2921 Length=137457 Score = 78.8 bits (86), Expect = 8e-12 Identities = 59/71 (83%), Gaps = 9/71 (13%) Strand=Plus/Plus Query 1118 TGGCCCGTGCTACCTTGGAAGGCTTCCAGAAAAACCGGCTAAACCGGCTGTATGTTTGGT 1177 ||||||| ||| ||||||||||||||||||| |||||||||||| ||||||| Sbjct 75328 TGGCCCGCGCTTCCTTGGAAGGCTTCCAGAA---------AAACCGGCTGTACGTTTGGT 75378 Query 1178 TGGTGTTTGCT 1188 ||||||||||| Sbjct 75379 TGGTGTTTGCT 75389 Score = 78.8 bits (86), Expect = 8e-12 Identities = 59/71 (83%), Gaps = 9/71 (13%) Strand=Plus/Plus Query 1118 TGGCCCGTGCTACCTTGGAAGGCTTCCAGAAAAACCGGCTAAACCGGCTGTATGTTTGGT 1177 ||||||| ||| |||||||||||||||| || |||||||||||||||||||| Sbjct 117805 TGGCCCGCGCTTCCTTGGAAGGCTTCCACAA---------AAACCGGCTGTATGTTTGGT 117855 Query 1178 TGGTGTTTGCT 1188 ||||||||||| Sbjct 117856 TGGTGTTTGCT 117866 >seq2515 Length=134396 Score = 78.8 bits (86), Expect = 8e-12 Identities = 59/71 (83%), Gaps = 9/71 (13%) Strand=Plus/Minus Query 1118 TGGCCCGTGCTACCTTGGAAGGCTTCCAGAAAAACCGGCTAAACCGGCTGTATGTTTGGT 1177 ||||||| ||| |||||||||||||||||||||||| ||||||| ||||||| Sbjct 6238 TGGCCCGCGCTTCCTTGGAAGGCTTCCAGAAAAACC---------GGCTGTACGTTTGGT 6188 Query 1178 TGGTGTTTGCT 1188 ||||||||||| Sbjct 6187 TGGTGTTTGCT 6177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4297180465536