Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_015399.1 Length=1957 Score E Sequences producing significant alignments: (Bits) Value seq1513 138 1e-29 seq437 87.8 2e-14 >seq1513 Length=22358 Score = 138 bits (152), Expect = 1e-29 Identities = 301/443 (68%), Gaps = 21/443 (5%) Strand=Plus/Plus Query 507 ACTTTTATTCGTTATGGGCGGGGTCTACGTGATTACGCCAACGTGATGCAGTACCGGAAG 566 |||||| | || |||||||| || ||||||||||||| | | | |||| || || Sbjct 8156 ACTTTTGTGCGCTATGGGCGTGGGCTACGTGATTACGTAAGCACGCTGCA--ACTGGGTA 8213 Query 567 CCA--CGTGATTTCAAAACGGAAGTGAATGTTTACGTCGGAGACCCCGGATGTGGAAAGA 624 || || |||||| | || || |||| | || |||| ||||||||||| || | Sbjct 8214 CCGTTCGGTCTTTCAAGTCTGAGGTTCATGTGTGGGTGTGAGAACCCGGATGTGGGAAAA 8273 Query 625 GCCGGAAG---GCG------TCGGAGCTTTGTGCAGGCACCAC----TGTGTACTATAAG 671 ||| ||| || | |||| | | ||||| | |||||| | || Sbjct 8274 CTCGGGCTTGTGCGGACATGTCCGGGCTT-GCCCTTGCACCCCAGGATGTGTATTTCAAA 8332 Query 672 CCTCGCGGTATGTGGTGGGATGGATACGATGGACAAGAGA-ATGTAATTGTCGATGACTT 730 || || ||| ||||||||||| || | ||| ||||| |||| ||| | ||||| || Sbjct 8333 CCACGTGGTCCCTGGTGGGATGGGTATG-TGGGGCAGAGATATGTTATTTTGGATGATTT 8391 Query 731 TTACGGCTGGATGCCATGTGATGAACTGTTGAGAGTGTTTGATCGATATCCTTGTAAAGT 790 |||||| ||| ||| || ||||||| |||||||| | | |||||| ||||||| | || Sbjct 8392 TTACGGGTGGGTGCAATATGATGAAATGTTGAGAATTTGTGATCGTTATCCTTTGAGGGT 8451 Query 791 ACCGGTAAAAGGAGCCTATGTGGAATTTGTGT-CAACTAATATATATGTGACGTCTAACA 849 ||| || || || | | ||| || ||||| | | ||| | | || |||| | Sbjct 8452 ACCTGTTAAGGGCTCATTTGTTGAGTTTGTTTGCGGGGTTTATTTTGATTACTGCTAATA 8511 Query 850 AGCATGTGTGGCAATGGTATAAGTTTGAAGGGTTTGACCCCGCCGCCGTCATGAGACGGG 909 ||||||||||| |||||| || || | || ||||| || | || |||||||| ||| Sbjct 8512 AGCATGTGTGGGAATGGTGGAACTTCCAGGGTTTTGAACCGGAAGCGATCATGAGAAGGG 8571 Query 910 TTAATGTGTATCTTGTGTACGAC 932 | ||||| || |||||| ||| Sbjct 8572 TCAATGTATACAATGTGTATGAC 8594 >seq437 Length=362111 Score = 87.8 bits (96), Expect = 2e-14 Identities = 183/273 (67%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 659 TGTGTACTATAAGCCTCGCGGTATGTGGTGGGATGGATACGATGGACAAGAGAATGTAAT 718 ||| |||| ||| ||||| || ||||||||||| || | |||||| || ||||||| Sbjct 289094 TGTTTACTTTAAACCTCGTGGCCAATGGTGGGATGGTTATGTGGGACAACAGTATGTAAT 289153 Query 719 TGTCGATGACTTTTACGGCTGGATGCCATGTGATGAACTGTTGAGAGTGTTTGATCGATA 778 | ||||| ||||| || ||| | | | |||||| ||||| | | | |||| | || Sbjct 289154 ATTGGATGATTTTTATGGGTGGGTACAGTATGATGAGATGTTGCGTATTTGTGATAGGTA 289213 Query 779 TCCTTGTAAAGTACCGGTAAAAGGAGCCTATGTGGAATTTGTGTCAACTAATATATATGT 838 || | | || || || || || | | |||||| |||||| | ||| | | Sbjct 289214 CCCCTTGAGGGTGCCTGTTAAGGGGTCTTTTGTGGAGTTTGTGGCGGGGTTTATTTTAAT 289273 Query 839 GACGTCTAACAAGCATGTGTGGCAATGGTATAAGTTTGAAGGGTTTGACCCCGCCGCCGT 898 || | ||||| ||||| ||| |||||| || || || ||||| || | || | Sbjct 289274 CACTGCAAACAAACATGTCTGGGAATGGTGGAACTTCCGGGGCTTTGAACCGGAAGCGAT 289333 Query 899 CATGAGACGGGTTAATGTGTATCTTGTGTACGA 931 ||| | || || |||||||| |||||| || Sbjct 289334 TATGCGTCGTGTCAATGTGTACAATGTGTATGA 289366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6152898124230