Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_015399.1
Length=1957
Score E
Sequences producing significant alignments: (Bits) Value
seq1513 138 1e-29
seq437 87.8 2e-14
>seq1513
Length=22358
Score = 138 bits (152), Expect = 1e-29
Identities = 301/443 (68%), Gaps = 21/443 (5%)
Strand=Plus/Plus
Query 507 ACTTTTATTCGTTATGGGCGGGGTCTACGTGATTACGCCAACGTGATGCAGTACCGGAAG 566
|||||| | || |||||||| || ||||||||||||| | | | |||| || ||
Sbjct 8156 ACTTTTGTGCGCTATGGGCGTGGGCTACGTGATTACGTAAGCACGCTGCA--ACTGGGTA 8213
Query 567 CCA--CGTGATTTCAAAACGGAAGTGAATGTTTACGTCGGAGACCCCGGATGTGGAAAGA 624
|| || |||||| | || || |||| | || |||| ||||||||||| || |
Sbjct 8214 CCGTTCGGTCTTTCAAGTCTGAGGTTCATGTGTGGGTGTGAGAACCCGGATGTGGGAAAA 8273
Query 625 GCCGGAAG---GCG------TCGGAGCTTTGTGCAGGCACCAC----TGTGTACTATAAG 671
||| ||| || | |||| | | ||||| | |||||| | ||
Sbjct 8274 CTCGGGCTTGTGCGGACATGTCCGGGCTT-GCCCTTGCACCCCAGGATGTGTATTTCAAA 8332
Query 672 CCTCGCGGTATGTGGTGGGATGGATACGATGGACAAGAGA-ATGTAATTGTCGATGACTT 730
|| || ||| ||||||||||| || | ||| ||||| |||| ||| | ||||| ||
Sbjct 8333 CCACGTGGTCCCTGGTGGGATGGGTATG-TGGGGCAGAGATATGTTATTTTGGATGATTT 8391
Query 731 TTACGGCTGGATGCCATGTGATGAACTGTTGAGAGTGTTTGATCGATATCCTTGTAAAGT 790
|||||| ||| ||| || ||||||| |||||||| | | |||||| ||||||| | ||
Sbjct 8392 TTACGGGTGGGTGCAATATGATGAAATGTTGAGAATTTGTGATCGTTATCCTTTGAGGGT 8451
Query 791 ACCGGTAAAAGGAGCCTATGTGGAATTTGTGT-CAACTAATATATATGTGACGTCTAACA 849
||| || || || | | ||| || ||||| | | ||| | | || |||| |
Sbjct 8452 ACCTGTTAAGGGCTCATTTGTTGAGTTTGTTTGCGGGGTTTATTTTGATTACTGCTAATA 8511
Query 850 AGCATGTGTGGCAATGGTATAAGTTTGAAGGGTTTGACCCCGCCGCCGTCATGAGACGGG 909
||||||||||| |||||| || || | || ||||| || | || |||||||| |||
Sbjct 8512 AGCATGTGTGGGAATGGTGGAACTTCCAGGGTTTTGAACCGGAAGCGATCATGAGAAGGG 8571
Query 910 TTAATGTGTATCTTGTGTACGAC 932
| ||||| || |||||| |||
Sbjct 8572 TCAATGTATACAATGTGTATGAC 8594
>seq437
Length=362111
Score = 87.8 bits (96), Expect = 2e-14
Identities = 183/273 (67%), Gaps = 0/273 (0%)
Strand=Plus/Plus
Query 659 TGTGTACTATAAGCCTCGCGGTATGTGGTGGGATGGATACGATGGACAAGAGAATGTAAT 718
||| |||| ||| ||||| || ||||||||||| || | |||||| || |||||||
Sbjct 289094 TGTTTACTTTAAACCTCGTGGCCAATGGTGGGATGGTTATGTGGGACAACAGTATGTAAT 289153
Query 719 TGTCGATGACTTTTACGGCTGGATGCCATGTGATGAACTGTTGAGAGTGTTTGATCGATA 778
| ||||| ||||| || ||| | | | |||||| ||||| | | | |||| | ||
Sbjct 289154 ATTGGATGATTTTTATGGGTGGGTACAGTATGATGAGATGTTGCGTATTTGTGATAGGTA 289213
Query 779 TCCTTGTAAAGTACCGGTAAAAGGAGCCTATGTGGAATTTGTGTCAACTAATATATATGT 838
|| | | || || || || || | | |||||| |||||| | ||| | |
Sbjct 289214 CCCCTTGAGGGTGCCTGTTAAGGGGTCTTTTGTGGAGTTTGTGGCGGGGTTTATTTTAAT 289273
Query 839 GACGTCTAACAAGCATGTGTGGCAATGGTATAAGTTTGAAGGGTTTGACCCCGCCGCCGT 898
|| | ||||| ||||| ||| |||||| || || || ||||| || | || |
Sbjct 289274 CACTGCAAACAAACATGTCTGGGAATGGTGGAACTTCCGGGGCTTTGAACCGGAAGCGAT 289333
Query 899 CATGAGACGGGTTAATGTGTATCTTGTGTACGA 931
||| | || || |||||||| |||||| ||
Sbjct 289334 TATGCGTCGTGTCAATGTGTACAATGTGTATGA 289366
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6152898124230
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |