Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_021206.1 Length=1798 Score E Sequences producing significant alignments: (Bits) Value seq437 86.0 7e-14 seq1513 77.0 4e-11 >seq437 Length=362111 Score = 86.0 bits (94), Expect = 7e-14 Identities = 81/101 (80%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 630 AATGGTGGGATGGATATTGTGGACAAGAAGTA-GTAATATTGGATGACTTTTATGGCTGG 688 ||||||||||||| ||| |||||| |||| |||||||||||||| |||||||| ||| Sbjct 289117 AATGGTGGGATGGTTATGTGGGACAA-CAGTATGTAATATTGGATGATTTTTATGGGTGG 289175 Query 689 CTTCCATATGATGAAATGTTAAGACTGTGTGATAGGTATCC 729 | | |||||||| ||||| | | ||||||||||| || Sbjct 289176 GTACAGTATGATGAGATGTTGCGTATTTGTGATAGGTACCC 289216 >seq1513 Length=22358 Score = 77.0 bits (84), Expect = 4e-11 Identities = 78/99 (79%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 632 TGGTGGGATGGATATTGTGGACAAGAAGTA-GTAATATTGGATGACTTTTATGGCTGGCT 690 ||||||||||| || ||||| ||| || || || |||||||| ||||| || ||| | Sbjct 8345 TGGTGGGATGGGTA-TGTGGGGCAGAGATATGTTATTTTGGATGATTTTTACGGGTGGGT 8403 Query 691 TCCATATGATGAAATGTTAAGACTGTGTGATAGGTATCC 729 | ||||||||||||||| ||| | |||||| | ||||| Sbjct 8404 GCAATATGATGAAATGTTGAGAATTTGTGATCGTTATCC 8442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5644156157640