Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_028045.1 Length=1767 Score E Sequences producing significant alignments: (Bits) Value seq437 86.0 7e-14 seq1513 78.8 1e-11 >seq437 Length=362111 Score = 86.0 bits (94), Expect = 7e-14 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 587 TACTGGAAGCCACGCGGGCAGTGGTGGGATGGGTATAATGGAGAGGATATTGTTGTATTA 646 |||| || || || || || ||||||||||| ||| ||| | | ||| |||| Sbjct 289098 TACTTTAAACCTCGTGGCCAATGGTGGGATGGTTATGTGGGACAACAGTATGTAATATTG 289157 Query 647 GATGATTTTTATGGATGGGTCCCCTATGATGAGCTTCTGCGAATTGGGGACCGCTACCCC 706 |||||||||||||| ||||| | ||||||||| | |||| ||| | || | |||||| Sbjct 289158 GATGATTTTTATGGGTGGGTACAGTATGATGAGATGTTGCGTATTTGTGATAGGTACCCC 289217 Query 707 CTGAAAGTACAGGTGAAGGGGGCCTTTGTAGAGTT 741 ||| || | || |||||| | ||||| ||||| Sbjct 289218 TTGAGGGTGCCTGTTAAGGGGTCTTTTGTGGAGTT 289252 >seq1513 Length=22358 Score = 78.8 bits (86), Expect = 1e-11 Identities = 109/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 593 AAGCCACGCGGGCAGTGGTGGGATGGGTATAATGGAGAG-GATATTGTTGTATTAGATGA 651 || ||||| || | ||||||||||||||| || || |||| |||| | || ||||| Sbjct 8330 AAACCACGTGGTCCCTGGTGGGATGGGTATGTGGGGCAGAGATA-TGTTATTTTGGATGA 8388 Query 652 TTTTTATGGATGGGTCCCCTATGATGAGCTTCTGCGAATTGGGGACCGCTACCCCCTGAA 711 |||||| || ||||| | |||||||| | || ||||| | || || || || ||| Sbjct 8389 TTTTTACGGGTGGGTGCAATATGATGAAATGTTGAGAATTTGTGATCGTTATCCTTTGAG 8448 Query 712 AGTACAGGTGAAGGGGGCCTTTGTAGAGTT 741 |||| || ||||| | ||||| ||||| Sbjct 8449 GGTACCTGTTAAGGGCTCATTTGTTGAGTT 8478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5544967472330