Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_031753.1 Length=2000 Score E Sequences producing significant alignments: (Bits) Value seq1513 141 1e-30 seq437 100 4e-18 >seq1513 Length=22358 Score = 141 bits (156), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 12/227 (5%) Strand=Plus/Plus Query 720 CCAGGATGCGGGAAAACGCGGGAAGCTTGTGCGGA----TGCGGC--TGCGCGGGAATTG 773 || ||||| |||||||| |||| |||||||||| | ||| ||| | | | Sbjct 8258 CCCGGATGTGGGAAAACTCGGG---CTTGTGCGGACATGTCCGGGCTTGCCCTTGCACCC 8314 Query 774 CAGT---TGTATTTCAAGCCACGGGGGCCTTGGTGGGATGGTTATAATGGGGAGGGTGCT 830 ||| |||||||||| ||||| || || ||||||||||| ||| ||| || | | Sbjct 8315 CAGGATGTGTATTTCAAACCACGTGGTCCCTGGTGGGATGGGTATGTGGGGCAGAGATAT 8374 Query 831 GTTATTTTGGATGATTTTTATGGGTGGGTTCCATTTGATGAATTGCTGAGAATTGGGGAC 890 |||||||||||||||||||| |||||||| | || ||||||| || |||||||| | || Sbjct 8375 GTTATTTTGGATGATTTTTACGGGTGGGTGCAATATGATGAAATGTTGAGAATTTGTGAT 8434 Query 891 AGGTACCCTCTGAGGGTTCCTGTTAAGGGTGGGTTTGTTAATTTTGT 937 | || ||| ||||||| ||||||||||| |||||| | ||||| Sbjct 8435 CGTTATCCTTTGAGGGTACCTGTTAAGGGCTCATTTGTTGAGTTTGT 8481 >seq437 Length=362111 Score = 100 bits (110), Expect = 4e-18 Identities = 122/163 (75%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 780 TATTTCAAGCCACGGGGGCCTTGGTGGGATGGTTATAATGGGG--AGGGTGCTGTTATTT 837 || || || || || || | ||||||||||||||| |||| | || ||| || | Sbjct 289098 TACTTTAAACCTCGTGGCCAATGGTGGGATGGTTATG-TGGGACAACAGTA-TGTAATAT 289155 Query 838 TGGATGATTTTTATGGGTGGGTTCCATTTGATGAATTGCTGAGAATTGGGGACAGGTACC 897 |||||||||||||||||||||| | | |||||| || || | ||| | || ||||||| Sbjct 289156 TGGATGATTTTTATGGGTGGGTACAGTATGATGAGATGTTGCGTATTTGTGATAGGTACC 289215 Query 898 CTCTGAGGGTTCCTGTTAAGGGTGGGTTTGTTAATTTTGTGGC 940 | ||||||| ||||||||||| ||||| | |||||||| Sbjct 289216 CCTTGAGGGTGCCTGTTAAGGGGTCTTTTGTGGAGTTTGTGGC 289258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6290482429660