Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_031753.1
Length=2000
Score E
Sequences producing significant alignments: (Bits) Value
seq1513 141 1e-30
seq437 100 4e-18
>seq1513
Length=22358
Score = 141 bits (156), Expect = 1e-30
Identities = 169/227 (74%), Gaps = 12/227 (5%)
Strand=Plus/Plus
Query 720 CCAGGATGCGGGAAAACGCGGGAAGCTTGTGCGGA----TGCGGC--TGCGCGGGAATTG 773
|| ||||| |||||||| |||| |||||||||| | ||| ||| | | |
Sbjct 8258 CCCGGATGTGGGAAAACTCGGG---CTTGTGCGGACATGTCCGGGCTTGCCCTTGCACCC 8314
Query 774 CAGT---TGTATTTCAAGCCACGGGGGCCTTGGTGGGATGGTTATAATGGGGAGGGTGCT 830
||| |||||||||| ||||| || || ||||||||||| ||| ||| || | |
Sbjct 8315 CAGGATGTGTATTTCAAACCACGTGGTCCCTGGTGGGATGGGTATGTGGGGCAGAGATAT 8374
Query 831 GTTATTTTGGATGATTTTTATGGGTGGGTTCCATTTGATGAATTGCTGAGAATTGGGGAC 890
|||||||||||||||||||| |||||||| | || ||||||| || |||||||| | ||
Sbjct 8375 GTTATTTTGGATGATTTTTACGGGTGGGTGCAATATGATGAAATGTTGAGAATTTGTGAT 8434
Query 891 AGGTACCCTCTGAGGGTTCCTGTTAAGGGTGGGTTTGTTAATTTTGT 937
| || ||| ||||||| ||||||||||| |||||| | |||||
Sbjct 8435 CGTTATCCTTTGAGGGTACCTGTTAAGGGCTCATTTGTTGAGTTTGT 8481
>seq437
Length=362111
Score = 100 bits (110), Expect = 4e-18
Identities = 122/163 (75%), Gaps = 4/163 (2%)
Strand=Plus/Plus
Query 780 TATTTCAAGCCACGGGGGCCTTGGTGGGATGGTTATAATGGGG--AGGGTGCTGTTATTT 837
|| || || || || || | ||||||||||||||| |||| | || ||| || |
Sbjct 289098 TACTTTAAACCTCGTGGCCAATGGTGGGATGGTTATG-TGGGACAACAGTA-TGTAATAT 289155
Query 838 TGGATGATTTTTATGGGTGGGTTCCATTTGATGAATTGCTGAGAATTGGGGACAGGTACC 897
|||||||||||||||||||||| | | |||||| || || | ||| | || |||||||
Sbjct 289156 TGGATGATTTTTATGGGTGGGTACAGTATGATGAGATGTTGCGTATTTGTGATAGGTACC 289215
Query 898 CTCTGAGGGTTCCTGTTAAGGGTGGGTTTGTTAATTTTGTGGC 940
| ||||||| ||||||||||| ||||| | ||||||||
Sbjct 289216 CCTTGAGGGTGCCTGTTAAGGGGTCTTTTGTGGAGTTTGTGGC 289258
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6290482429660
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |