Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_001899.1 Length=5941 Score E Sequences producing significant alignments: (Bits) Value seq3084 168 3e-38 >seq3084 Length=5704 Score = 168 bits (186), Expect = 3e-38 Identities = 319/459 (69%), Gaps = 28/459 (6%) Strand=Plus/Minus Query 2509 AAGTTAAATGCTTTTCTAATTATATCTCCTCCAAGTGGTGGTAAAAATTTCTTTTTTGAT 2568 |||| ||| | ||| || || |||| ||| || ||||||||||||||||||||| Sbjct 2831 AAGTGTAATACATTTTTAGTTCATTCTCGGCCATCTGCCGGTAAAAATTTCTTTTTTGAT 2772 Query 2569 ATGATTTTTGGATTGTTATTATCATATGGTCAATTGGG----ACAAGCTAATAGACATAA 2624 | | || ||| | ||| ||| ||| |||| ||| | ||| | |||| Sbjct 2771 ACATTATTAACATTATGTTTAAATCTTGGGCAACTGGGCACTGCAAACAAAT-CAAATAA 2713 Query 2625 CTTATTTGCTTTTCAAGAAGCTCCAAATAAACGT-GTACTAT--TATGGAATGAACCTAA 2681 |||||||||||||| ||| | || ||| | | ||| |||||||||| || || Sbjct 2712 ---TTTTGCTTTTCAAGATGCTGC---CAACCGTAGAATTATTCTATGGAATGAGCCGAA 2659 Query 2682 TTATGAAAGTTCCTTAACTGATACTATAAAAATGATGTTT---GGAGGAGATCCTTATAC 2738 ||||||| | | || ||| | | |||| ||||| |||||||| | | Sbjct 2658 TTATGAATCAAGCATGACAGATTATTTGAAAACTTTGTTTGAAGGAGGAGACAC---CAA 2602 Query 2739 TGTTAGAGTTAA-AAATCGTATGGATGCACATGTAAAGCGTACTCCTGTTATTATACTTA 2797 ||||||||||| | | | | ||| | ||||||||| | || ||| |||| ||||||| Sbjct 2601 GGTTAGAGTTAAGATGTTGGGT-GATACTCATGTAAAGAGAACACCTATTATAATACTTA 2543 Query 2798 CTAATAATACTGTACCTTTTATGTATGAACTTGCTTTTAGTGATAGAATAATTCAATATA 2857 |||||||| ||| ||||||| || |||||||| |||||||| | || |||| Sbjct 2542 CTAATAATCACGTAAATTTTATGAGCGATGATGCTTTTAAAGATAGAATTAAGCAGTATA 2483 Query 2858 AATGGAATGCTGCGCCATTCTTAAAGGATTATGAATTGAAACCACATCCAATGACATTTT 2917 ||||||| |||| || || | || |||||| |||| |||||| ||||| || |||||| Sbjct 2482 AATGGAAAACTGCACCTTTTCTGAAAGATTATAAATTAAAACCATATCCATTGTCATTTT 2423 Query 2918 TTC---TTTTATTAAGTAAATATAACATTACATTTTAAT 2953 ||| |||||||| |||||||| || | ||||||| Sbjct 2422 TTCAAATTTTATTA---AAATATAAAATAAAGTTTTAAT 2387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18893043142650