Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_004284.1 Length=5908 Score E Sequences producing significant alignments: (Bits) Value seq3084 125 3e-25 >seq3084 Length=5704 Score = 125 bits (138), Expect = 3e-25 Identities = 295/435 (68%), Gaps = 28/435 (6%) Strand=Plus/Plus Query 3018 ATTAAAATGTAATATTATATTTACTCAATAAAA---GGAAAAATGTCATTGGATGTGGTT 3074 ||||||| | || |||||||| ||||||| | ||||||| || ||||| ||||| Sbjct 2387 ATTAAAACTTTATTTTATATTTT---AATAAAATTTGAAAAAATGACAATGGATATGGTT 2443 Query 3075 TCAATTCATAATCCTTTAAGAATGGCGCAGCATTCCACTTGTATTGAATAATTCTATCAC 3134 | |||| |||||| || | || || |||| ||||| || || || |||||||||| Sbjct 2444 TTAATTTATAATCTTTCAGAAAAGGTGCAGTTTTCCATTTATACTGCTTAATTCTATCTT 2503 Query 3135 TAAAAGCAGTTTCATACATAAAAGGTACAGTATTATTAGTAAGTATTATAACTGGAGTGC 3194 |||||||| || ||||||| ||| |||||||||||||||||||| || || | Sbjct 2504 TAAAAGCATCATCGCTCATAAAATTTACGTGATTATTAGTAAGTATTATAATAGGTGTTC 2563 Query 3195 GTTTTACATGTGCATCCATACGA-TTTTTAACTCTAACAGTATAAGGATCTCCTC---CA 3250 |||||||| | || || | | | ||||||||||| | | ||||||| || Sbjct 2564 TCTTTACATGAGTAT-CACCCAACATCTTAACTCTAAC---CTTGGTGTCTCCTCCTTCA 2619 Query 3251 AACATCATTTTAATTGTATCAGTTAAAGAACTCTCATAGTTAGGTTCATTCCAT--AATA 3308 |||| |||| | ||| || | ||||| || || ||||||||| |||| Sbjct 2620 AACAAAGTTTTCAAATAATCTGTCATGCTTGATTCATAATTCGGCTCATTCCATAGAATA 2679 Query 3309 ATAC-ACGTTTATTAGGTGCTTCTTGAAATGCAAACAAGTTATGTCTATTAGCTTG---- 3363 || | ||| || | || |||||||| ||| || |||| | ||| | ||| Sbjct 2680 ATTCTACG---GTTGGCAGCATCTTGAAAAGCA---AAATTAT-TTGATTTGTTTGCAGT 2732 Query 3364 ACCTAACTGACCATAAGATAGTAATAATCCAAAGATCATATCAAAAAAGAAATTTTTACC 3423 || | || ||| | || ||||| || | |||||||||||||||||||||| Sbjct 2733 GCCCAGTTGCCCAAGATTTAAACATAATGTTAATAATGTATCAAAAAAGAAATTTTTACC 2792 Query 3424 AGCACTTGGAGGAGA 3438 ||| ||| |||| Sbjct 2793 GGCAGATGGCCGAGA 2807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18787477544325