Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_004286.1 Length=6039 Score E Sequences producing significant alignments: (Bits) Value seq3084 152 2e-33 >seq3084 Length=5704 Score = 152 bits (168), Expect = 2e-33 Identities = 293/422 (69%), Gaps = 24/422 (6%) Strand=Plus/Minus Query 2588 TGCTGGTAAAAATTTCTTTTTTGATATGATTTTTGGATTATTATTATCTTATGGACAACT 2647 ||| |||||||||||||||||||||| | || ||||| ||| | ||| ||||| Sbjct 2796 TGCCGGTAAAAATTTCTTTTTTGATACATTATTAACATTATGTTTAAATCTTGGGCAACT 2737 Query 2648 TGGA----CAAGCTAATAGACATAACTTATTTGCTTTTCAAGAAGCTCCGAATAAACGTG 2703 || ||| | ||| | |||| || |||||||||||| ||| | || | Sbjct 2736 GGGCACTGCAAACAAATCAA-ATAATTT---TGCTTTTCAAGATGCTGCCAACCGTAGAA 2681 Query 2704 TACTTCTATGGAATGAACCAAACTATGAAAGTTCTTTAACTGATACAATTAAAATGATGT 2763 | ||||||||||||| || || |||||| | || ||| | |||| ||| Sbjct 2680 TTATTCTATGGAATGAGCCGAATTATGAATCAAGCATGACAGATTATTTGAAAACTTTGT 2621 Query 2764 TTG---GAGGAGACCCATATACTGTTAGAGTTAAGAA-TCGTATGGATGCACATGTAAAA 2819 ||| |||||||| | | ||||||||||||| | | || || | |||||||| Sbjct 2620 TTGAAGGAGGAGACACCAAG---GTTAGAGTTAAGATGTTGGGTG-ATACTCATGTAAAG 2565 Query 2820 CGCACTCCAGTTATTATACTTACTAATAA-CACTGTACCTTTTATGTATGAAACAGCTTT 2878 | || || |||| |||||||||||||| ||| ||| ||||||| || ||||| Sbjct 2564 AGAACACCTATTATAATACTTACTAATAATCAC-GTAAATTTTATGAGCGATGATGCTTT 2506 Query 2879 TGCTGATAGAATTATTCAATATAAATGGAATGCTGCGCCATTCCTAAAGGAATACGAATT 2938 | |||||||||| || ||||||||||| |||| || || || || || || |||| Sbjct 2505 TAAAGATAGAATTAAGCAGTATAAATGGAAAACTGCACCTTTTCTGAAAGATTATAAATT 2446 Query 2939 GAAACCACATCCAATGACATTTTTTC---TTTTATTGAGTAAATATAATATTACATTTTA 2995 |||||| ||||| || ||||||||| ||||||| |||||||| || | ||||| Sbjct 2445 AAAACCATATCCATTGTCATTTTTTCAAATTTTATT---AAAATATAAAATAAAGTTTTA 2389 Query 2996 AT 2997 || Sbjct 2388 AT 2387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19203163223220