Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_005341.1 Length=6034 Score E Sequences producing significant alignments: (Bits) Value seq3084 149 2e-32 >seq3084 Length=5704 Score = 149 bits (164), Expect = 2e-32 Identities = 298/427 (70%), Gaps = 36/427 (8%) Strand=Plus/Minus Query 2587 GCTGGTAAAAATTTTTTCTTTGATATGATTTTTGGC-TTACTATTATCTTATGGACAACT 2645 || ||||||||||| || ||||||| ||| || | ||| ||| | ||| ||||| Sbjct 2795 GCCGGTAAAAATTTCTTTTTTGATAC-ATTATTAACATTATGTTTAAATCTTGGGCAACT 2737 Query 2646 TGGT----CAAGCTAATAGACATAACTTGTTTGCTTTTCAAGAAGCTCCTAATAAACGT- 2700 || ||| | ||| | |||| || |||||||||||| ||| | || ||| Sbjct 2736 GGGCACTGCAAACAAATCAA-ATAATTT---TGCTTTTCAAGATGCTGCCAAC---CGTA 2684 Query 2701 GTATTATT--ATGGAATGAACCTAATTATGAGAGTTCAC---TAACTGATACAATTAAAA 2755 | |||||| ||||||||| || |||||||| ||| | || ||| | |||| Sbjct 2683 GAATTATTCTATGGAATGAGCCGAATTATGAA---TCAAGCATGACAGATTATTTGAAAA 2627 Query 2756 TGATGTTTG---GAGGAGACCCATATACTGTTAGAGTTAAGAA-TCGTATGGATGCACAT 2811 |||||| |||||||| | | ||||||||||||| | | || || | ||| Sbjct 2626 CTTTGTTTGAAGGAGGAGACACCAAG---GTTAGAGTTAAGATGTTGGGTG-ATACTCAT 2571 Query 2812 GTAAAACGCACTCCAGTTATTATACTAACTAATAATACAGTACCTTTTATGTATGAAACT 2871 ||||| | || || |||| ||||| ||||||||| ||| ||||||| || | Sbjct 2570 GTAAAGAGAACACCTATTATAATACTTACTAATAATCACGTAAATTTTATGAGCGATGAT 2511 Query 2872 GCTTTTGCTGATAGAATTATTCAGTATAAATGGAATGCTGCGCCATTCCTAAAGGATTAT 2931 |||||| |||||||||| |||||||||||||| |||| || || || || |||||| Sbjct 2510 GCTTTTAAAGATAGAATTAAGCAGTATAAATGGAAAACTGCACCTTTTCTGAAAGATTAT 2451 Query 2932 GAATTGAAACCACATCCAATGACATTTTTCC---TTTTATTGAGTAAATATAATATTACA 2988 |||| |||||| ||||| || ||||||| | ||||||| |||||||| || | Sbjct 2450 AAATTAAAACCATATCCATTGTCATTTTTTCAAATTTTATT---AAAATATAAAATAAAG 2394 Query 2989 TTTTAAT 2995 ||||||| Sbjct 2393 TTTTAAT 2387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19187168584520