Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_012685.1 Length=5759 Score E Sequences producing significant alignments: (Bits) Value seq3084 174 6e-40 >seq3084 Length=5704 Score = 174 bits (192), Expect = 6e-40 Identities = 380/556 (68%), Gaps = 26/556 (5%) Strand=Plus/Minus Query 3419 AACTACTTGATTAACACAAGTTTTTCCATCCATCTGTTGTATATGTTTGGCTAAGCATAC 3478 |||||||||||||||| |||||||||||||| |||| || | || ||||| || Sbjct 1753 AACTACTTGATTAACAACTGTTTTTCCATCCATTTGTTTAATTTTTTCAGCTAAACAAGG 1694 Query 3479 CCAACCTCCCCAGGAATTAGTTGTAGCACCGTCTGTGTCAG--TTGCCGCTTC-ATCACT 3535 |||||| || |||| | || | | |||| || || || ||| | || Sbjct 1693 CCAACCACCA----AATTG--TCTAAAAGCAGCTGTAGTAGCATTTCCAGTTCTAGCAGA 1640 Query 3536 AAGTGCGTGATAATTATATATATTACACTGCCTACCAACATGATGTTTTGGAATATATGA 3595 |||| ||||||||||| | || || || || ||||||||||||||| || | Sbjct 1639 TTGTGCCCAATAATTATATAAAAAGGCATGTCTTCCTACTTGATGTTTTGGAATA-AT-A 1582 Query 3596 AGCAAAACTAGGATGATTATTATTCGTTCCG---TAAAAATCTGCTACCATTCCTCTATA 3652 |||| | | | | || || | || ||| |||||| ||||||||| ||| Sbjct 1581 TTTAAAAATGCGTTCGT-ATCGTTGTTACCAGAATAATAATCTGTTACCATTCCAGGATA 1523 Query 3653 TTTTCCTGGAATTGGTTTATA-TCTCGGCTTTGCAATTTTACTAGGAATCATAGGTTTAC 3711 | | || | || || ||| ||| || |||||||| | |||| | |||||||| Sbjct 1522 TGTACCAGA---TGCTTGATAGTCT-GGTTTTGCAATAGCAGTAGGTACCATAGGTTGTG 1467 Query 3712 CAGCAGTAAATTCAGTAAAGGAAACATTAGATCCATACCCTGTCTTATTCAAAGCTGTAG 3771 |||| |||| | ||||| |||||||||||||| | ||||| |||| || | || Sbjct 1466 TAGCATCAAATGCTGTAAATGAAACATTAGATCCCCAACCTGTTCTATTTAATCCATGAG 1407 Query 3772 CAACAGCTATATCATTAATCTGATTAAGAGTAGCTAGCGATGTAGCAGATGATGC---TG 3828 | ||||| |||||||| |||||||| | ||| |||| || || | |||||| || Sbjct 1406 CGACAGCAATATCATTTATCTGATTTAAAGTTGCTA---ATCCAGTACTTGATGCATTTG 1350 Query 3829 TTTCGAATTGAATAGTTGACCCTCTATAAATAACCTGAATAGATACATCCTTTACTCTTG 3888 |||| ||||| ||||| || |||||||| ||||| | || |||||| | | | | Sbjct 1349 TTTCAAATTGTATAGTAGAGCCTCTATATATAACTTCAACGTCTACATCTGTAATTTTAC 1290 Query 3889 ATCCAATTGGCATCAGATTAAACTCGGACGGAGTTAAATAAAAACATGGTAAATGCCATG 3948 |||| |||| |||| || ||| || || || ||||| |||| || | ||| |||| Sbjct 1289 TTCCACTTGGAATCAAATCAAATTCTGATTGATTTAAAAAAAATGCAGGAATATGGCATG 1230 Query 3949 GAACTTCTGCCAGATA 3964 |||||||||| | ||| Sbjct 1229 GAACTTCTGCTAAATA 1214 Score = 147 bits (162), Expect = 8e-32 Identities = 542/826 (66%), Gaps = 51/826 (6%) Strand=Plus/Minus Query 2352 GGCAAAAATTTTTTCTTTGA--CATGATTATGGCAATTTGTTTAAACTATGGACAATTAG 2409 || |||||||| || ||||| ||| |||| || | |||||||| ||| ||| | | Sbjct 2792 GGTAAAAATTTCTTTTTTGATACATTATTAA--CATTATGTTTAAATCTTGGGCAACTGG 2735 Query 2410 GACAAGCAAACAGACATAATTTGTTTGCATTTCAAGAAGCTCCCAATAAAAGA-TTATTA 2468 | ||||||| | ||| ||||| |||||||| ||| |||| ||| ||||| Sbjct 2734 GCACTGCAAACAAATCAAATAATTTTGCTTTTCAAGATGCTGCCAACCGTAGAATTATT- 2676 Query 2469 CTTTGGAATGAACCAAACTATGAA---AGCGCAATGACAGATACAATAAAAATGATGATG 2525 || |||||||| || || |||||| ||| ||||||||| | |||| || | Sbjct 2675 CTATGGAATGAGCCGAATTATGAATCAAGC---ATGACAGATTATTTGAAAACTTTGTTT 2619 Query 2526 GGCGGAG-ATCCATATACTGTAAGAGTAAA-ATATCAAGGAGATACACATGTAACCAGAA 2583 | |||| | || | || ||||| || || | || ||||| ||||||| |||| Sbjct 2618 GAAGGAGGAGACACCAAG-GTTAGAGTTAAGATGTTG-GGTGATACTCATGTAAAGAGAA 2561 Query 2584 CTCCCGTCTTAATACTTACCAATAATTATGTTTCATTTCTTCAAGAATCTGCGTTTAAAG 2643 | || | |||||||||| |||||| | || ||| | || ||| ||||||| Sbjct 2560 CACCTATTATAATACTTACTAATAATCACGTAAATTTTATGAGCGATGATGCTTTTAAAG 2501 Query 2644 ATAGAATTAAAGTGTATAAATGGAGAGAAGCACCATTTCTTAAAGATGTTCATGTAAAAC 2703 |||||||||| ||||||||||| | ||||| ||||| |||||| | | |||||| Sbjct 2500 ATAGAATTAAGCAGTATAAATGGAAAACTGCACCTTTTCTGAAAGATTATAAATTAAAAC 2441 Query 2704 CTTATCCTATGGCTTTCTTTGATATACTAAATAAATACAACATTCAATTTTAAATCGTTT 2763 | ||||| || | || ||| | || || ||||| || | | || ||| |||| | | Sbjct 2440 CATATCCATTGTCATTTTTTCAAATTTTATTAAAATATAA-AATAAAGTTTTAATCTTAT 2382 Query 2764 ---------ATTATGTTGCTCGTGGTAAAATATCACCTGAAAATGTCTTATACAATCCTG 2814 |||||||| || || | | ||| | || || ||||| | Sbjct 2381 AAAATATAAATTATGTTTCTAATGATGGGGT---TCCT---ATTG---GGTATAATCCAG 2331 Query 2815 CGTATGGGGCATGGTCGTTCTCGGGATCAATATAATTTTGA-GGA--ATTTCATTACTTG 2871 | | | ||| ||| || ||||| | |||| || ||| ||| | ||| Sbjct 2330 CAAAAGTAGCACCGTCATTTCTTGGATCTA-CTAATGCAGATGGACGATTCGCCAAGTTG 2272 Query 2872 G-TAGTGAAATAACAACTTCTCCTGGAGGAACATTGGGTACATTAGCATAAGGAAATTCT 2930 | || | || ||||||||| | || ||||| | || ||||| | || | | Sbjct 2271 GTTATTTGCAT---AACTTCTCCCTGTGGTACATTTGCTAATGTAGCAAACGGCCAAGCA 2215 Query 2931 GTTGGAGTATGTTCAACGACATTCATTGTAGCAATTACTTCCCAATAAGCTCTTGTGTCT 2990 ||||| || ||| | ||| |||||||||||| ||||||||||| |||||||| || Sbjct 2214 GTTGGTTGATATTCTTCAACAGTCATTGTAGCAACAACTTCCCAATATGCTCTTGTATCA 2155 Query 2991 GTCCAATTATCAAATACTCCTT---CTTCTAAGATCAATGCTCCACTAGACAAAGCTGGT 3047 |||||||||| ||| ||| | |||| || || | | || || || Sbjct 2154 GTCCAATTATTAAACTGAGCTTGAGATGCTAA---TAAAGCAGTGGTGGTTAATGCAGGA 2098 Query 3048 ACTGGTTGTACACCAATATGCATAGATGGCATAATATGAGGATCTTGTGCTCCCCAAAAT 3107 || || |||||||| ||||| | |||||| ||||||| || | |||||||||| Sbjct 2097 ACAGGCTGTACACCGATATGTAAAGATGGTTGAATATGACCTTCCATGGTTCCCCAAAAT 2038 Query 3108 CCACTGCGTGCAAT-TTGAGACTTTTCAATAGGAGTATATATGTCA 3152 ||||| | | || |||||| |||||||| ||||| || || ||| Sbjct 2037 CCACT-CTTCATATATTGAGATTTTTCAATTGGAGTGTAAATATCA 1993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18310832873100