Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_019492.1 Length=5990 Score E Sequences producing significant alignments: (Bits) Value seq3084 136 2e-28 >seq3084 Length=5704 Score = 136 bits (150), Expect = 2e-28 Identities = 376/567 (66%), Gaps = 51/567 (9%) Strand=Plus/Minus Query 2461 ATTACTAAAATATCAATGTAATGATGATGAAGATTTAATTGTAGAATTTCTTACTA-ACT 2519 ||||||||||| ||||| | |||||||||||| ||| | | | ||| |||| | | | Sbjct 2940 ATTACTAAAATTTCAATTTGATGATGATGAAGTAGCAATAGCA-AGTTTTTTACAACATT 2882 Query 2520 TGGTTAATGTTTTAGATCGTCG----------------TATTCCCAAATTAAATGCTTTT 2563 | ||||||||| | ||| || ||| | |||| || || | Sbjct 2881 TAGTTAATGTTGTTGATTTTCAACCTGCTAATAGACCATATGCTGAAATAAAGTGTAATA 2822 Query 2564 CTTATTTTGT-----CTCCTCCAAGTGCTGGTAAAAATTTCTTTTTTGATATGATTTTTG 2618 | | ||| || ||| ||| ||| |||||||||||||||||||||| | || Sbjct 2821 CATTTTTAGTTCATTCTCGGCCATCTGCCGGTAAAAATTTCTTTTTTGATACATTATTAA 2762 Query 2619 GATTGTTATTATCTTATGGACAGTTAGGT----CAAGCTAATAGACATAACTTGTTTGCT 2674 ||| | ||| | ||| || | || ||| | ||| | |||| || |||| Sbjct 2761 CATTATGTTTAAATCTTGGGCAACTGGGCACTGCAAACAAATCAA-ATAATTT---TGCT 2706 Query 2675 TTTCAAGAAGCACCTAATAAACGT-GTGTTAT--TGTGGAATGAACCTAATTATGAAAGT 2731 |||||||| | || || ||| | |||| | |||||||| || ||||||||| Sbjct 2705 TTTCAAGATG---CTGCCAACCGTAGAATTATTCTATGGAATGAGCCGAATTATGAATCA 2649 Query 2732 TCGTTAACAGACACAATTAAAATGATGTTT---GGAGGAGACCCTTACACTGTTAGAGTT 2788 | ||||| | |||| ||||| ||||||||| | || ||||||||| Sbjct 2648 AGCATGACAGATTATTTGAAAACTTTGTTTGAAGGAGGAGACAC---CAAGGTTAGAGTT 2592 Query 2789 AAGA-ATCGTATGGATGCACATGTAAAACGCACTCCAGTTATTATACTAACTAACAATAC 2847 |||| | | | ||| | |||||||| | || || |||| ||||| ||||| ||| Sbjct 2591 AAGATGTTGGGT-GATACTCATGTAAAGAGAACACCTATTATAATACTTACTAATAATCA 2533 Query 2848 TGTACCTTTTATGTATGAAACTGCTTTTAGTGATAGAATTATTCAATATAAATGGGATGC 2907 ||| ||||||| || |||||||| |||||||||| || ||||||||| | | Sbjct 2532 CGTAAATTTTATGAGCGATGATGCTTTTAAAGATAGAATTAAGCAGTATAAATGGAAAAC 2473 Query 2908 TGCGCCATTCCTGAAGGATTATGAATTGAAACCACATCCAATGACATTTTTCC---TTTT 2964 ||| || || ||||| |||||| |||| |||||| ||||| || ||||||| | |||| Sbjct 2472 TGCACCTTTTCTGAAAGATTATAAATTAAAACCATATCCATTGTCATTTTTTCAAATTTT 2413 Query 2965 ATTGAGTAAATACAATATATCATTTTA 2991 ||| ||||| || ||| ||||| Sbjct 2412 ATT---AAAATATAAAATAAAGTTTTA 2389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19049792061375