Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_003287.2 Length=6407 Score E Sequences producing significant alignments: (Bits) Value seq14 174 6e-40 seq3446 100 1e-17 >seq14 Length=18393167 Score = 174 bits (192), Expect = 6e-40 Identities = 98/99 (99%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 5817 AACCCTATCTCGGGCTATTCTTTTGATTTATAAGGGATTTTGCCGATTTCGGCCTATTGG 5876 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4844978 AACCCTATCTCGGTCTATTCTTTTGATTTATAAGGGATTTTGCCGATTTCGGCCTATTGG 4845037 Query 5877 TTAAAAAATGAGCTGATTTAACAAAAATTTAACGCGAAT 5915 ||||||||||||||||||||||||||||||||||||||| Sbjct 4845038 TTAAAAAATGAGCTGATTTAACAAAAATTTAACGCGAAT 4845076 >seq3446 Length=41325 Score = 100 bits (110), Expect = 1e-17 Identities = 148/193 (77%), Gaps = 34/193 (18%) Strand=Plus/Plus Query 4005 AACCCAA---CCTAAGCCGGA--GGTTAAAAA--GGTAGTCTCTC----AGACC-TAT-- 4050 ||||||| | |||||||| ||||||||| |||||| ||| ||||| || Sbjct 14403 AACCCAAAACCTTAAGCCGGGACGGTTAAAAAAGGGTAGTTCCTCTTCAAGACCGTAGTG 14462 Query 4051 GATTTT-GATAAATTC---ACTATTGACTCTTCTC-----AGCGTCTTAA-TCTAAG-CT 4099 |||||| |||||||| ||||||||| ||||| |||||||||| |||||| || Sbjct 14463 GATTTTTGATAAATTACTAACTATTGACCCTTCTTCTTCGAGCGTCTTAAATCTAAGACT 14522 Query 4100 ATCGCTA--TGTTTTC-AAGGATT--CTAAGGGAAAATTAATTAATA--GCGACGATTTA 4152 ||||||| ||||||| ||||| | ||||||||||||||| ||||| |||| ||||| Sbjct 14523 ATCGCTACGTGTTTTCGAAGGACTTCCTAAGGGAAAATTAA-TAATAAGGCGAGTATTTA 14581 Query 4153 CAG-AAGCAAGGT 4164 ||| ||||||||| Sbjct 14582 CAGTAAGCAAGGT 14594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20385049099432