Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_003287.2 Length=6407 Score E Sequences producing significant alignments: (Bits) Value seq213072 262 2e-66 seq295602 259 2e-65 seq279942 226 1e-55 seq138774 149 3e-32 >seq213072 Length=511 Score = 262 bits (290), Expect = 2e-66 Identities = 147/148 (99%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 3001 GGCTTAACTCAATTCTTGTGGGTTATCTCTCTGATATTAGCGCTCAATTACCCTCTGACT 3060 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27 GGCTTAACTCAATTCTTGTGGGTTATCTCTCTGATATTAGCGCTCAATTACCCTCTGACT 86 Query 3061 TTGTTCAGGGTGTTCAGTTAATTCTCCCGTCTAATGCGCTTCCCTGTTTTTATGTTATTC 3120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 87 TTGTTCAGGGTGTTCAGTTAATTCTCCCGTCTAATGCGCTTCCCTGTTTTTATGTTATTC 146 Query 3121 TCTCTGTAAAGGCTGCTATTTTCATTTT 3148 ||||||||||||||||||||||||| || Sbjct 147 TCTCTGTAAAGGCTGCTATTTTCATCTT 174 >seq295602 Length=499 Score = 259 bits (286), Expect = 2e-65 Identities = 154/157 (98%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 4008 CCAACCTAAGCCGGAGGTTAAAAAGGTAGTCTCTCAGACCTATGATTTTGATAAATTCAC 4067 ||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 28 CCAAC-TAAGCCGGAGGTTAAAA-GGTAGTCTCTCAGACCTATGATTT-GATAAATTCAC 84 Query 4068 TATTGACTCTTCTCAGCGTCTTAATCTAAGCTATCGCTATGTTTTCAAGGATTCTAAGGG 4127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 85 TATTGACTCTTCTCAGCGTCTTAATCTAAGCTATCGCTATGTTTTCAAGGATTCTAAGGG 144 Query 4128 AAAATTAATTAATAGCGACGATTTACAGAAGCAAGGT 4164 ||||||||||||||||||||||||||||||||||||| Sbjct 145 AAAATTAATTAATAGCGACGATTTACAGAAGCAAGGT 181 >seq279942 Length=488 Score = 226 bits (250), Expect = 1e-55 Identities = 132/135 (98%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 2001 TTCTCTTGAGGAGTCTCAGCCTCTTAATACTTTCATGTTTCAGAATAATAGGTTCCGAAA 2060 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 29 TTCTCTTGAGGAGTCTCAGCCTCTTAATACTTTCATGTTTCAGAATAATAGGTTCCGAAA 88 Query 2061 TAGGCAGGGGGCATTAACTGTTTATACGGGCACTGTTACTCAAGGCACTGACCCCGTTAA 2120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 89 TAGGCAGGGGGCATTAACTGTTTATACGGGCACTGTTACTCAAGGCACTGACCCCGTTAA 148 Query 2121 AACTTATTACCAGTA 2135 ||||| | | ||||| Sbjct 149 AACTT-TCATCAGTA 162 >seq138774 Length=249 Score = 149 bits (164), Expect = 3e-32 Identities = 82/82 (100%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 1002 CCAGCCTATGCGCCTGGTCTGTACACCGTTCATCTGTCCTCTTTCAAAGTTGGTCAGTTC 1061 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 29 CCAGCCTATGCGCCTGGTCTGTACACCGTTCATCTGTCCTCTTTCAAAGTTGGTCAGTTC 88 Query 1062 GGTTCCCTTATGATTGACCGTC 1083 |||||||||||||||||||||| Sbjct 89 GGTTCCCTTATGATTGACCGTC 110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20289167052988