Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_002361.1 Length=2037 Score E Sequences producing significant alignments: (Bits) Value seq2073 84.2 3e-13 >seq2073 Length=11458 Score = 84.2 bits (92), Expect = 3e-13 Identities = 169/248 (68%), Gaps = 7/248 (3%) Strand=Plus/Plus Query 581 CGTGACTTCAAAACGGAAGTCATCGTCATCACGGGCCCGCCCGGTTGCGGGAAGAGCCGT 640 || ||||| || || || |||| ||| | ||| || || || ||||||||||| || Sbjct 5288 CGAGACTTTAAGACTGACGTCACTGTCCTGGTGGGTCCCCCGGGCTGCGGGAAGAGTCGC 5347 Query 641 TGGGCAGCTGACT--ACCCCGGA---AGTAAATTCTACAAGATGAAGGGTGAATGGTGGG 695 ||||||| ||| | | || | ||| ||||| || |||||| ||||||| Sbjct 5348 CATGCAGCTGGTGTGACCTCTGGCTCAGCATATT--ACAAGTCGAGGGGTGAGTGGTGGG 5405 Query 696 ACGGGTACGACCACCAGGAAGTAGTCATCATTGATGACTTCTACGGCTGGCTGCCCTTCT 755 | || |||| ||||| | || ||||||||||| |||||||| |||||| | | Sbjct 5406 ATGGATACGTGGGGCAGGAGGATGTGATCATTGATGATTTCTACGGATGGCTGAAATACG 5465 Query 756 GTGAGCTGCTGCGTGTGACCGACCGGTACCCGCATAAGGTGCCCGTGAAAGGGGCCTTTG 815 ||| || || ||| | |||||| || ||||| ||| || | ||||| || |||| Sbjct 5466 ATGAACTTCTACGTATCTGCGACCGCTATCCGCACCGGGTTCCTATTAAAGGAGCTTTTG 5525 Query 816 TGGAGTTC 823 ||||| Sbjct 5526 CTCAGTTC 5533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6409390722554