Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_021568.1 Length=1832 Score E Sequences producing significant alignments: (Bits) Value seq529 87.8 2e-14 seq494 87.8 2e-14 seq2073 77.0 4e-11 >seq529 Length=173527 Score = 87.8 bits (96), Expect = 2e-14 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 724 TACAAACCAAGAGGAGAATGGTGGGATGGATACTGTGGACAACCTAATGTGGTCATCGAC 783 ||||| | || || || |||||||| || ||| || || |||| |||||||| Sbjct 6728 TACAAGTCGAGGGGTGAGTGGTGGGACGGGTACGTGGGTCAGGAGGATGTCATCATCGAC 6669 Query 784 GACTTTTATGGATGGATTAAATATGACGAACTTCTCAAAATTTGCGACCGATACCCCTAC 843 ||||| ||||| ||| | || || ||||||||||| || ||||| |||||||| || Sbjct 6668 GACTTCTATGGCTGGCTGAAGTACGACGAACTTCTTCGGATCTGCGATCGATACCCTCAC 6609 Query 844 CGCGTCCCAGTCAAAGGA 861 || ||||| ||||| ||| Sbjct 6608 CGTGTCCCTGTCAAGGGA 6591 >seq494 Length=190942 Score = 87.8 bits (96), Expect = 2e-14 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 724 TACAAACCAAGAGGAGAATGGTGGGATGGATACTGTGGACAACCTAATGTGGTCATCGAC 783 ||||| | || || || |||||||| || ||| || || |||| |||||||| Sbjct 1568 TACAAGTCGAGGGGTGAGTGGTGGGACGGGTACGTGGGTCAGGAGGATGTCATCATCGAC 1509 Query 784 GACTTTTATGGATGGATTAAATATGACGAACTTCTCAAAATTTGCGACCGATACCCCTAC 843 ||||| ||||| ||| | || || ||||||||||| || ||||| |||||||| || Sbjct 1508 GACTTCTATGGCTGGCTGAAGTACGACGAACTTCTTCGGATCTGCGATCGATACCCTCAC 1449 Query 844 CGCGTCCCAGTCAAAGGA 861 || ||||| ||||| ||| Sbjct 1448 CGTGTCCCTGTCAAGGGA 1431 >seq2073 Length=11458 Score = 77.0 bits (84), Expect = 4e-11 Identities = 102/142 (72%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 721 TACTACAAACCAAGAGGAGAATGGTGGGATGGATACTGTGGACAACCTAATGTGGTCATC 780 || ||||| | || || || ||||||||||||||| || || ||||| |||| Sbjct 5378 TATTACAAGTCGAGGGGTGAGTGGTGGGATGGATACGTGGGGCAGGAGGATGTGATCATT 5437 Query 781 GACGACTTTTATGGATGGATTAAATATGACGAACTTCTCAAAATTTGCGACCGATACCCC 840 || || || || |||||| | ||||| || |||||||| || |||||||| || || Sbjct 5438 GATGATTTCTACGGATGGCTGAAATACGATGAACTTCTACGTATCTGCGACCGCTATCCG 5497 Query 841 TACCGCGTCCCAGTCAAAGGAG 862 |||| || || | ||||||| Sbjct 5498 CACCGGGTTCCTATTAAAGGAG 5519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5753412141364