Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_021707.2 Length=1855 Score E Sequences producing significant alignments: (Bits) Value seq2073 89.7 6e-15 seq529 78.8 1e-11 seq494 78.8 1e-11 >seq2073 Length=11458 Score = 89.7 bits (98), Expect = 6e-15 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 782 TACTACAAGCCGCGTGGAGAATGGTGGGATGGATACACCGGACAACCGTGCGTTGTTATC 841 || |||||| || | || || ||||||||||||||| || || | || | || Sbjct 5378 TATTACAAGTCGAGGGGTGAGTGGTGGGATGGATACGTGGGGCAGGAGGATGTGATCATT 5437 Query 842 GATGACTTCTACGGATGGATCAAATACGATGAGCTTCTCAAGATCTGCGACAGATATCCT 901 ||||| |||||||||||| | ||||||||||| ||||| ||||||||| | ||||| Sbjct 5438 GATGATTTCTACGGATGGCTGAAATACGATGAACTTCTACGTATCTGCGACCGCTATCCG 5497 Query 902 TACAGAGTCCCTGTCAAAGGAG 923 || | || ||| | ||||||| Sbjct 5498 CACCGGGTTCCTATTAAAGGAG 5519 >seq529 Length=173527 Score = 78.8 bits (86), Expect = 1e-11 Identities = 100/138 (72%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 785 TACAAGCCGCGTGGAGAATGGTGGGATGGATACACCGGACAACCGTGCGTTGTTATCGAT 844 |||||| || | || || |||||||| || ||| || || | || | ||||| Sbjct 6728 TACAAGTCGAGGGGTGAGTGGTGGGACGGGTACGTGGGTCAGGAGGATGTCATCATCGAC 6669 Query 845 GACTTCTACGGATGGATCAAATACGATGAGCTTCTCAAGATCTGCGACAGATATCCTTAC 904 |||||||| || ||| | || ||||| || ||||| ||||||||| |||| ||| || Sbjct 6668 GACTTCTATGGCTGGCTGAAGTACGACGAACTTCTTCGGATCTGCGATCGATACCCTCAC 6609 Query 905 AGAGTCCCTGTCAAAGGA 922 | ||||||||||| ||| Sbjct 6608 CGTGTCCCTGTCAAGGGA 6591 >seq494 Length=190942 Score = 78.8 bits (86), Expect = 1e-11 Identities = 100/138 (72%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 785 TACAAGCCGCGTGGAGAATGGTGGGATGGATACACCGGACAACCGTGCGTTGTTATCGAT 844 |||||| || | || || |||||||| || ||| || || | || | ||||| Sbjct 1568 TACAAGTCGAGGGGTGAGTGGTGGGACGGGTACGTGGGTCAGGAGGATGTCATCATCGAC 1509 Query 845 GACTTCTACGGATGGATCAAATACGATGAGCTTCTCAAGATCTGCGACAGATATCCTTAC 904 |||||||| || ||| | || ||||| || ||||| ||||||||| |||| ||| || Sbjct 1508 GACTTCTATGGCTGGCTGAAGTACGACGAACTTCTTCGGATCTGCGATCGATACCCTCAC 1449 Query 905 AGAGTCCCTGTCAAAGGA 922 | ||||||||||| ||| Sbjct 1448 CGTGTCCCTGTCAAGGGA 1431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5827009738278