Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_023421.1 Length=1378 Score E Sequences producing significant alignments: (Bits) Value seq529 109 5e-21 seq494 109 5e-21 seq2073 107 2e-20 seq287 89.7 4e-15 >seq529 Length=173527 Score = 109 bits (120), Expect = 5e-21 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 622 GCCTACTACAAACCACGCGGCGAATGGTGGGACGGATACACCGGACAAGAGGACGTGATC 681 |||| ||||| | | || || ||||||||||| ||| || || ||||| || ||| Sbjct 6734 GCCTTTTACAAGTCGAGGGGTGAGTGGTGGGACGGGTACGTGGGTCAGGAGGATGTCATC 6675 Query 682 CTGGATGATTTCTACGGCTGGTTGAAGTTCGACGAACTTTTGAAAATATGTGACCGTTAC 741 | || || ||||| |||||| |||||| |||||||||| | || || || || ||| Sbjct 6674 ATCGACGACTTCTATGGCTGGCTGAAGTACGACGAACTTCTTCGGATCTGCGATCGATAC 6615 Query 742 CCGTATCGTGTCCCTGTGAAGGGCTCATTTGTGCAGTTTACTGCTAAGAGGATTTACATT 801 || | ||||||||||| ||||| || || | ||||| | || | |||||||| ||| Sbjct 6614 CCTCACCGTGTCCCTGTCAAGGGATCCTTCGCCCAGTTCTCGGCCAGGAGGATTTTCATC 6555 Query 802 ACTTCTAA 809 || || || Sbjct 6554 ACCTCCAA 6547 >seq494 Length=190942 Score = 109 bits (120), Expect = 5e-21 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 622 GCCTACTACAAACCACGCGGCGAATGGTGGGACGGATACACCGGACAAGAGGACGTGATC 681 |||| ||||| | | || || ||||||||||| ||| || || ||||| || ||| Sbjct 1574 GCCTTTTACAAGTCGAGGGGTGAGTGGTGGGACGGGTACGTGGGTCAGGAGGATGTCATC 1515 Query 682 CTGGATGATTTCTACGGCTGGTTGAAGTTCGACGAACTTTTGAAAATATGTGACCGTTAC 741 | || || ||||| |||||| |||||| |||||||||| | || || || || ||| Sbjct 1514 ATCGACGACTTCTATGGCTGGCTGAAGTACGACGAACTTCTTCGGATCTGCGATCGATAC 1455 Query 742 CCGTATCGTGTCCCTGTGAAGGGCTCATTTGTGCAGTTTACTGCTAAGAGGATTTACATT 801 || | ||||||||||| ||||| || || | ||||| | || | |||||||| ||| Sbjct 1454 CCTCACCGTGTCCCTGTCAAGGGATCCTTCGCCCAGTTCTCGGCCAGGAGGATTTTCATC 1395 Query 802 ACTTCTAA 809 || || || Sbjct 1394 ACCTCCAA 1387 >seq2073 Length=11458 Score = 107 bits (118), Expect = 2e-20 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 621 AGCCTACTACAAACCACGCGGCGAATGGTGGGACGGATACACCGGACAAGAGGACGTGAT 680 ||| || ||||| | | || || |||||||| |||||| || || ||||| ||||| Sbjct 5374 AGCATATTACAAGTCGAGGGGTGAGTGGTGGGATGGATACGTGGGGCAGGAGGATGTGAT 5433 Query 681 CCTGGATGATTTCTACGGCTGGTTGAAGTTCGACGAACTTTTGAAAATATGTGACCGTTA 740 | | |||||||||||||| ||| |||| | ||| |||||| | || || ||||| || Sbjct 5434 CATTGATGATTTCTACGGATGGCTGAAATACGATGAACTTCTACGTATCTGCGACCGCTA 5493 Query 741 CCCGTATCGTGTCCCTGTGAAGGGCTCATTTGTGCAGTTTACTGCTAAGAGGATTTACAT 800 ||| | || || ||| | || || | |||| ||||| |||| |||||||||| || Sbjct 5494 TCCGCACCGGGTTCCTATTAAAGGAGCTTTTGCTCAGTTCTCTGCCAAGAGGATTTTTAT 5553 Query 801 TACTTCTAA 809 || || || Sbjct 5554 CACCTCCAA 5562 >seq287 Length=462495 Score = 89.7 bits (98), Expect = 4e-15 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 621 AGCCTACTACAAACCACGCGGCGAATGGTGGGACGGATACACCGGACAAGAGGACGTGAT 680 ||| || |||||| | || || ||||||||||||| ||| ||||| || ||||| || Sbjct 325426 AGCTTATTACAAATCTCGGGGTCAATGGTGGGACGGCTACGTGGGACAGGAAGACGTCAT 325367 Query 681 CCTGGATGATTTCTACGGCTGGTTGAAGTTCGACGAACTTTTGAAAATATGTGACCGTTA 740 | | |||| || || |||||| |||| | ||||| | | || || ||||| || Sbjct 325366 CATCAATGACTTTTATGGCTGGCTGAAATATGACGAGATGCTTCGGATCTGCGACCGCTA 325307 Query 741 CCCGTATCGTGTCCCTGTGAAGGGCTCATTTGTGCAGTTTACTGCTAAGAGGATTTACAT 800 || |||| || || | ||||| | |||| || ||| |||| ||| ||||| || Sbjct 325306 TCCTCATCGGGTGCCAATTAAGGGTGCGTTTGCACAATTTTCTGCGAAGCAGATTTTTAT 325247 Query 801 TACTTCTAA 809 |||||| || Sbjct 325246 TACTTCAAA 325238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4300659576192