Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_025476.1 Length=1865 Score E Sequences producing significant alignments: (Bits) Value seq2073 80.6 3e-12 seq529 78.8 1e-11 seq494 78.8 1e-11 >seq2073 Length=11458 Score = 80.6 bits (88), Expect = 3e-12 Identities = 103/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 934 CTCCTTTGACAGGGACTCTGTAAGGATATCTGTCGCAGATCTTGAGAAGCTCGTCGTATT 993 ||||||| | ||| || | || ||||| | ||||||||| ||||| || ||||||| Sbjct 5519 CTCCTTTAATAGGAACCCGGTGCGGATAGCGGTCGCAGATACGTAGAAGTTCATCGTATT 5460 Query 994 TGATCCATCCGTAGAAGTCATCGATAACAACGCAGGGTTGTCCGGTGTATCCATCCCACC 1053 | | |||||||||||| ||||| || | || || || |||||||||||||| Sbjct 5459 TCAGCCATCCGTAGAAATCATCAATGATCACATCCTCCTGCCCCACGTATCCATCCCACC 5400 Query 1054 ATTCTCCGCGCGGCTTGTAGTA 1075 | || || | || |||||| || Sbjct 5399 ACTCACCCCTCGACTTGTAATA 5378 >seq529 Length=173527 Score = 78.8 bits (86), Expect = 1e-11 Identities = 100/138 (72%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 935 TCCTTTGACAGGGACTCTGTAAGGATATCTGTCGCAGATCTTGAGAAGCTCGTCGTATTT 994 ||| ||||||||||| | || ||| |||| ||||||||| ||||| |||||||| || Sbjct 6591 TCCCTTGACAGGGACACGGTGAGGGTATCGATCGCAGATCCGAAGAAGTTCGTCGTACTT 6650 Query 995 GATCCATCCGTAGAAGTCATCGATAACAACGCAGGGTTGTCCGGTGTATCCATCCCACCA 1054 | ||| || |||||||| ||||| | || || || ||| || |||||||| Sbjct 6651 CAGCCAGCCATAGAAGTCGTCGATGATGACATCCTCCTGACCCACGTACCCGTCCCACCA 6710 Query 1055 TTCTCCGCGCGGCTTGTA 1072 || || | || |||||| Sbjct 6711 CTCACCCCTCGACTTGTA 6728 >seq494 Length=190942 Score = 78.8 bits (86), Expect = 1e-11 Identities = 100/138 (72%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 935 TCCTTTGACAGGGACTCTGTAAGGATATCTGTCGCAGATCTTGAGAAGCTCGTCGTATTT 994 ||| ||||||||||| | || ||| |||| ||||||||| ||||| |||||||| || Sbjct 1431 TCCCTTGACAGGGACACGGTGAGGGTATCGATCGCAGATCCGAAGAAGTTCGTCGTACTT 1490 Query 995 GATCCATCCGTAGAAGTCATCGATAACAACGCAGGGTTGTCCGGTGTATCCATCCCACCA 1054 | ||| || |||||||| ||||| | || || || ||| || |||||||| Sbjct 1491 CAGCCAGCCATAGAAGTCGTCGATGATGACATCCTCCTGACCCACGTACCCGTCCCACCA 1550 Query 1055 TTCTCCGCGCGGCTTGTA 1072 || || | || |||||| Sbjct 1551 CTCACCCCTCGACTTGTA 1568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5859008693458