Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_031753.1 Length=2000 Score E Sequences producing significant alignments: (Bits) Value seq1991 93.3 5e-16 >seq1991 Length=109347 Score = 93.3 bits (102), Expect = 5e-16 Identities = 182/264 (69%), Gaps = 10/264 (4%) Strand=Plus/Minus Query 678 CCGCGTGATTTTAAAACTGAAGTTTATGTTTTTATTGGTCCTCCAGGATGCGGGAAAACG 737 || |||||||| ||||| |||| | ||| || | || ||||| ||||| |||||| | Sbjct 41676 CCTCGTGATTTCAAAACAAAAGTCTTTGTGTTCGTAGGCCCTCCCGGATGTGGGAAATCA 41617 Query 738 CGGGAAGCTTGT-GCGGATGCGGCTGCGCGGGAATTGCAGTTG-TATTTCAAGCCACGGG 795 ||| | | || || ||||| |||| || | |||| ||||||||| | Sbjct 41616 ----AAGATGGCCGCTGAACTT--TGCGCCGGAAA--CACTACCTATTACAAGCCACGTG 41565 Query 796 GGCCTTGGTGGGATGGTTATAATGGGGAGGGTGCTGTTATTTTGGATGATTTTTATGGGT 855 | ||||||||||| || ||| |||| | | ||| || | |||||||| || || | Sbjct 41564 GTCCTTGGTGGGACGGCTATGATGGACATGAAAGTGTCGTTGTAGATGATTTCTACGGTT 41505 Query 856 GGGTTCCATTTGATGAATTGCTGAGAATTGGGGACAGGTACCCTCTGAGGGTTCCTGTTA 915 || | ||| ||||||| || | | || | ||||||||||| | ||| || |||| Sbjct 41504 GGATGTCATGTGATGAACTGTTACGTGTTTGTGACAGGTACCCATGCAAGGTCCCGGTTA 41445 Query 916 AGGGTGGGTTTGTTAATTTTGTGG 939 |||||| || ||| | ||||||| Sbjct 41444 AGGGTGCCTTCGTTGAATTTGTGG 41421 Score = 86.0 bits (94), Expect = 8e-14 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 779 GTATTTCAAGCCACGGGGGCCTTGGTGGGATGGTTATAATGGGGAGGGTGCTGTTATTTT 838 ||||| |||||| |||| |||||||||||||| ||| || | ||| | | Sbjct 38497 GTATTATAAGCCAAGGGGACCTTGGTGGGATGGGTATGATTCACACCCGAATGTGGTGAT 38438 Query 839 GGATGATTTTTATGGGTGGGTTCCATTTGATGAATTGCTGAGAATTGGGGACAGGTACCC 898 ||||||||| ||||||||||| | | |||||| |||| | | | ||| | ||| | Sbjct 38437 GGATGATTTCTATGGGTGGGTAGCTTATGATGAGATGCTACGGGTCTGTGACCGTTACTC 38378 Query 899 TCTGAGGGTTCCTGTTAAGGGTGGGTTTGTTAATTTTGTG 938 | | ||||||||||||||||| |||||| | |||||| Sbjct 38377 TTGTAAGGTTCCTGTTAAGGGTGCATTTGTTGAATTTGTG 38338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6289109320212