Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_001510.1 Length=5149 Score E Sequences producing significant alignments: (Bits) Value seq10 181 3e-42 >seq10 Length=39035891 Score = 181 bits (200), Expect = 3e-42 Identities = 261/365 (72%), Gaps = 10/365 (3%) Strand=Plus/Plus Query 1414 TAAACAGACAAGGAGGCAAAAGAAATACTGTTTTATTTCATGGACCAGCCAGCACAGGCA 1473 |||||| ||||| || ||||||||| || ||||||| | ||| | || || ||||| | Sbjct 34329623 TAAACAAACAAGTGGGTAAAAGAAATGCTATTTTATTGCCTGGTCTGGCAAGAACAGGAA 34329682 Query 1474 AATCTATTATTGCACAAGCCATAGCACAAGCAGTTGGCAATGTTGGTTGCTATAATGCAG 1533 ||||| | || | || || || || ||||| ||| |||||||||| || ||| Sbjct 34329683 AATCTCTAATAACTCAGAAGATTGCTCAGTTGGTTGGTAATATTGGTTGCTAAAACTCAG 34329742 Query 1534 CCAATGTAAACTTT-CCATTTAATGACTGTACCAACAAGAACTTGATTTGGGTAGAAGAA 1592 | ||||| |||||| |||||||||||||||||||| || ||||| ||||| || ||| Sbjct 34329743 CAAATGTCAACTTTTCCATTTAATGACTGTACCAATAAAAACTTAATTTG---AGTTGAA 34329799 Query 1593 GCTGGTAACTTTGGACAGCAAGTAAACCAGTTTAAAGCCATTTGCTCTGGTCAAACTATT 1652 || || ||||||||||| |||| || ||||||| || || || |||| | | Sbjct 34329800 GCAGGAAACTTTGGACAAGAAGTTAATTGGTTTAAACAAATCATGTCAGGACAAATTGTC 34329859 Query 1653 CGCATTGATCAAAAAGGAAAAGGCAGCAAACAGATTGAACCAACACCAGTCATCATGACC 1712 | |||||||||||||||||||| ||| |||||| |||| ||| ||||| Sbjct 34329860 CATATTGATCAAAAAGGAAAAGGTTTAAAAACAATTGAATCAAC-----TCACTATGACA 34329914 Query 1713 ACAAATGAGAACATTACAGTGGTCAGAATAGGCTGCGAAGAAAGACCAGAACACACTCAA 1772 |||||||| | || || ||| || ||| ||| |||||||| |||||| | Sbjct 34329915 ACAAATGAAATGATCACCTAAGTCCAAACAGGTCATGAATTAAGACCAG-ACACACATAG 34329973 Query 1773 CCAAT 1777 ||||| Sbjct 34329974 CCAAT 34329978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16361130705000