Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_001539.1 Length=5323 Score E Sequences producing significant alignments: (Bits) Value seq10 194 6e-46 seq156 152 2e-33 >seq10 Length=39035891 Score = 194 bits (214), Expect = 6e-46 Identities = 230/310 (74%), Gaps = 9/310 (3%) Strand=Plus/Plus Query 1428 TAAATAGACAAGGTGGTAAAAGAAATACAGTTCTTTTTCATGGACCAGCAAGTACAGGAA 1487 |||| | ||||| |||||||||||| | || | || | ||| | ||||| ||||||| Sbjct 34329623 TAAACAAACAAGTGGGTAAAAGAAATGCTATTTTATTGCCTGGTCTGGCAAGAACAGGAA 34329682 Query 1488 AATCTATCATTGCTCAAGCCATAGCACAAGCTGTGGGTAATGTTGGTTGTTATAATGCAG 1547 ||||| | || |||| || || || || |||||| ||||||| || || ||| Sbjct 34329683 AATCTCTAATAACTCAGAAGATTGCTCAGTTGGTTGGTAATATTGGTTGCTAAAACTCAG 34329742 Query 1548 CAAATGT-AAATTTTCCATTTAATGACTGTACCAATAAAAATTTAATTTGGATTGAAGAA 1606 ||||||| || |||||||||||||||||||||||||||||| |||||||| || ||| Sbjct 34329743 CAAATGTCAACTTTTCCATTTAATGACTGTACCAATAAAAACTTAATTTGAGTT---GAA 34329799 Query 1607 GCTGGTAACTTTGGTCAACAAGTTAATCAATTTAAAGCAATTTGTTCTGGACAAACAATT 1666 || || |||||||| ||| |||||||| |||||| ||| || ||||||| | Sbjct 34329800 GCAGGAAACTTTGGACAAGAAGTTAATTGGTTTAAACAAATCATGTCAGGACAAATTGTC 34329859 Query 1667 AGAATTGATCAAAAAGGTAAAGGAAGTAAGCAAATTGAACCAACTCCAGTAATTATGACA 1726 |||||||||||||| ||||| || ||||||| |||||| | ||||||| Sbjct 34329860 CATATTGATCAAAAAGGAAAAGGTTTAAAAACAATTGAATCAACTC-----ACTATGACA 34329914 Query 1727 ACTAATGAAA 1736 || ||||||| Sbjct 34329915 ACAAATGAAA 34329924 >seq156 Length=8022314 Score = 152 bits (168), Expect = 2e-33 Identities = 149/191 (78%), Gaps = 7/191 (4%) Strand=Plus/Minus Query 1601 GAAGAAGCTGGTAACTTTGGTCAACAAGTTAATCAATTTAAAGCAATTTGTTCTGGACAA 1660 |||| |||||| || ||||| ||||||| | || ||| || ||| ||||||||| Sbjct 3606566 GAAGGAGCTGGAAATTTTGGACAACAAGCACACCAGTTTCAACAAATCATGTCTGGACAA 3606507 Query 1661 ACAATTAGAATTGATCAAAAAGGTAAAGGAAGTAAGCAAATTGAACCAACTCCAGTAATT 1720 ||| | ||||||||||| ||||||||||||||||| |||||||||| ||||||||| Sbjct 3606506 ACAGTAAGAATTGATCAGAAAGGTAAAGGAAGTAAAACTATTGAACCAATTCCAGTAATA 3606447 Query 1721 ATGACAACTAATGAAAATATAACAATTGTGAGAATTGGATGTGAAGAAAGACCTGAACAT 1780 |||||||| |||||| ||||||||| | |||||| |||| ||||||| || || Sbjct 3606446 ATGACAAC-AATGAAGCTATAACAAT------AGTTGGATATGAACCAAGACCTTAATAT 3606394 Query 1781 ACACAACCAAT 1791 || ||||||| Sbjct 3606393 ACTTAACCAAT 3606383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16917805860000