Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_001718.1 Length=5075 Score E Sequences producing significant alignments: (Bits) Value seq10 178 4e-41 seq156 98.7 3e-17 >seq10 Length=39035891 Score = 178 bits (196), Expect = 4e-41 Identities = 263/367 (72%), Gaps = 12/367 (3%) Strand=Plus/Plus Query 1441 CTAAACAGACAAGGAGGAAAAAGAAATACAATTCTATTTCATGGGCCAGCATCAACAGGA 1500 ||||||| ||||| || ||||||||| | ||| |||| | ||| | ||| ||||||| Sbjct 34329622 CTAAACAAACAAGTGGGTAAAAGAAATGCTATTTTATTGCCTGGTCTGGCAAGAACAGGA 34329681 Query 1501 AAAAGTATAATTGCTCAACACATTGCAAACTTAGTTGGTAATGTTGGTTGCTACAATGCA 1560 ||| | |||| |||| | ||||| | || ||||||||| |||||||||| || || Sbjct 34329682 AAATCTCTAATAACTCAGAAGATTGCTCAGTTGGTTGGTAATATTGGTTGCTAAAACTCA 34329741 Query 1561 GCCAATGTGAACTTT-CCATTTAATGACTGTACAAATAAAAACTTAATATGGATTGAAGA 1619 || ||||| |||||| ||||||||||||||||| |||||||||||||| || || || Sbjct 34329742 GCAAATGTCAACTTTTCCATTTAATGACTGTACCAATAAAAACTTAATTTGAGTT---GA 34329798 Query 1620 AGCAGGAAACTTCTCTAACCAAGTAAACCAATTCAAAGCCAT-ATGTTCAGGTCAAACAA 1678 |||||||||||| | |||| || || ||| || ||| ||||| |||| Sbjct 34329799 AGCAGGAAACTTTGGACAAGAAGTTAATTGGTTTAAACAAATCATG-TCAGGACAAATTG 34329857 Query 1679 TTAGAATTGACCAAAAAGGTAAAGGAAGCAAACAAATTGAACCAACTCCTGTAATAATGA 1738 | ||||| |||||||| ||||| ||| ||||||| |||||| | |||| Sbjct 34329858 TCCATATTGATCAAAAAGGAAAAGGTTTAAAAACAATTGAATCAACTC-----ACTATGA 34329912 Query 1739 CTACAAATGAAGACATAACTAAAGTTAGAATAGGATGCGAGGAAAGACCAGAACATACAC 1798 | ||||||||| || || |||| || ||| || |||||||| ||| ||| Sbjct 34329913 CAACAAATGAAATGATCACCTAAGTCCAAACAGGTCATGAATTAAGACCAG-ACACACAT 34329971 Query 1799 AACCAAT 1805 | ||||| Sbjct 34329972 AGCCAAT 34329978 >seq156 Length=8022314 Score = 98.7 bits (108), Expect = 3e-17 Identities = 139/192 (72%), Gaps = 9/192 (5%) Strand=Plus/Minus Query 1615 GAAGAAGCAGGAAACTTCTCTAACCAAGTAAACCAATTCAAAGCCAT-ATGTTCAGGTCA 1673 |||| ||| ||||| || | |||| | |||| || || || |||| | || || Sbjct 3606566 GAAGGAGCTGGAAATTTTGGACAACAAGCACACCAGTTTCAACAAATCATGT-CTGGACA 3606508 Query 1674 AACAATTAGAATTGACCAAAAAGGTAAAGGAAGCAAACAAATTGAACCAACTCCTGTAAT 1733 |||| | |||||||| || |||||||||||||| ||| |||||||||| ||| ||||| Sbjct 3606507 AACAGTAAGAATTGATCAGAAAGGTAAAGGAAGTAAAACTATTGAACCAATTCCAGTAAT 3606448 Query 1734 AATGACTACAAATGAAGACATAACTAAAGTTAGAATAGGATGCGAGGAAAGACCAGAACA 1793 |||||| || ||||||| ||||| | |||| |||| || |||||| || | Sbjct 3606447 AATGACAAC-AATGAAGCTATAACAATAGTT------GGATATGAACCAAGACCTTAATA 3606395 Query 1794 TACACAACCAAT 1805 ||| ||||||| Sbjct 3606394 TACTTAACCAAT 3606383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16124383800000