Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_026815.1 Length=4613 Score E Sequences producing significant alignments: (Bits) Value seq10 194 5e-46 seq156 125 2e-25 >seq10 Length=39035891 Score = 194 bits (214), Expect = 5e-46 Identities = 255/350 (73%), Gaps = 15/350 (4%) Strand=Plus/Plus Query 1190 GAACCCATACAAAGTATTTCATGCAATGATGTGCTGTCTAAACAAACAAATGGGCAAAAG 1249 ||| |||| ||| || ||||| || |||| |||||||||||||||| |||| ||||| Sbjct 34329585 GAATCCATCTAAAATAAAACATGCGATCATGTACTGTCTAAACAAACAAGTGGGTAAAAG 34329644 Query 1250 AAACACAATCTTACTTTGTGGTCCAGCAAGTACTGGAAAAAGCCTAATAGCACAAAAAAT 1309 ||| | || ||| | ||||| ||||| || |||||| |||||| | || || || Sbjct 34329645 AAATGCTATTTTATTGCCTGGTCTGGCAAGAACAGGAAAATCTCTAATAACTCAGAAGAT 34329704 Query 1310 TGCTCAATTGGTTGGTAATGTAGGATGCTACAATCCAAGCAATGTTAAC-TTTCCATTCA 1368 |||||| |||||||||||| | || ||||| || || ||||| ||| |||||||| | Sbjct 34329705 TGCTCAGTTGGTTGGTAATATTGGTTGCTAAAACTCAGCAAATGTCAACTTTTCCATTTA 34329764 Query 1369 ACGATTGTAGCAACAAAAACCTAATATGGATAGAAGAAGCAGGAAACTTTGGAACTCAAG 1428 | || |||| ||| |||||| |||| || || |||||||||||||||||| ||| Sbjct 34329765 ATGACTGTACCAATAAAAACTTAATTTG---AGTTGAAGCAGGAAACTTTGGACAAGAAG 34329821 Query 1429 TAAACCAATTTAAAGCAATCATGAGTGGCCAAGCAATTAGAC---TAGACCAAAAAGGCA 1485 | || |||||| ||||||| || || |||| | | || |||||||| | Sbjct 34329822 TTAATTGGTTTAAACAAATCATGTCAGGACA---AATTGTCCATATTGATCAAAAAGGAA 34329878 Query 1486 AAGGTAGCAAAACCATCGAACCAACTCCAGTTATAATGACAACAAATGAA 1535 ||||| ||||| || ||| |||||| | ||||||||||||||| Sbjct 34329879 AAGGTTTAAAAACAATTGAATCAACTC-----ACTATGACAACAAATGAA 34329923 >seq156 Length=8022314 Score = 125 bits (138), Expect = 2e-25 Identities = 144/193 (75%), Gaps = 7/193 (4%) Strand=Plus/Minus Query 1399 TAGAAGAAGCAGGAAACTTTGGAACTCAAGTAAACCAATTTAAAGCAATCATGAGTGGCC 1458 |||||| ||| ||||| |||||| |||| | |||| ||| || ||||||| ||| | Sbjct 3606568 TAGAAGGAGCTGGAAATTTTGGACAACAAGCACACCAGTTTCAACAAATCATGTCTGGAC 3606509 Query 1459 AAGCAATTAGACTAGACCAAAAAGGCAAAGGTAGCAAAACCATCGAACCAACTCCAGTTA 1518 || || | ||| | || || ||||| ||||| || ||||| || ||||||| |||||| | Sbjct 3606508 AAACAGTAAGAATTGATCAGAAAGGTAAAGGAAGTAAAACTATTGAACCAATTCCAGTAA 3606449 Query 1519 TAATGACAACAAATGAAGACATAACAAGAGTTGTGGTAGGGTCTGAACTTAGACCAGAAC 1578 |||||||||| ||||||| ||||||| |||| || | ||||| ||||| || Sbjct 3606448 TAATGACAAC-AATGAAGCTATAACAATAGTT------GGATATGAACCAAGACCTTAAT 3606396 Query 1579 ATAAACAACCAAT 1591 ||| ||||||| Sbjct 3606395 ATACTTAACCAAT 3606383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14646315285000