Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_028650.1 Length=4634 Score E Sequences producing significant alignments: (Bits) Value seq10 183 9e-43 >seq10 Length=39035891 Score = 183 bits (202), Expect = 9e-43 Identities = 257/356 (72%), Gaps = 11/356 (3%) Strand=Plus/Plus Query 1290 AATAATATGAATCCaaaaaaaGTATTTCATGCAATTATGTGCTGTCTAAACAAACAGATG 1349 || ||| ||||||| ||| || ||||| || |||| ||||||||||||||| || Sbjct 34329577 AACAATCGGAATCCATCTAAAATAAAACATGCGATCATGTACTGTCTAAACAAACAAGTG 34329636 Query 1350 GGAAAAAGAAACACAATTCTACTTTGTGGTCCAGCAAGTACAGGAAAAAGCTTACTAGCA 1409 || |||||||| | ||| || | ||||| ||||| ||||||||| || || | Sbjct 34329637 GGTAAAAGAAATGCTATTTTATTGCCTGGTCTGGCAAGAACAGGAAAATCTCTAATAACT 34329696 Query 1410 CAAAAAATAGCTCAGTTAGTTGGAAATGTAGGTTGCTACAACGCTAGC-AATGTAAAC-T 1467 || || || |||||||| ||||| ||| | |||||||| ||| | ||| ||||| ||| | Sbjct 34329697 CAGAAGATTGCTCAGTTGGTTGGTAATATTGGTTGCTAAAACTC-AGCAAATGTCAACTT 34329755 Query 1468 TTCCATTCAATGATTGTAGCAACAAAAACCTAATATGGATAGAAGAAGCAGGAAACTTTG 1527 ||||||| ||||| |||| ||| |||||| |||| || || |||||||||||||||| Sbjct 34329756 TTCCATTTAATGACTGTACCAATAAAAACTTAATTTG---AGTTGAAGCAGGAAACTTTG 34329812 Query 1528 GAACTCAAGTAAACCAATTCAAAGCAATCATGAGTGGTCAATCAATCAGACTAGACCAAA 1587 || |||| || || ||| ||||||| || ||| || | || |||| Sbjct 34329813 GACAAGAAGTTAATTGGTTTAAACAAATCATGTCAGGACAAATTGTCCATATTGATCAAA 34329872 Query 1588 AAGGCAAAGGCAGCAAAACCATAGAACCAACTCCAGTAATTATGACCACAAATGAA 1643 |||| ||||| ||||| || ||| |||||| | |||||| ||||||||| Sbjct 34329873 AAGGAAAAGGTTTAAAAACAATTGAATCAACTC-----ACTATGACAACAAATGAA 34329923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14713500217500