Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_029797.1 Length=4765 Score E Sequences producing significant alignments: (Bits) Value seq10 170 6e-39 >seq10 Length=39035891 Score = 170 bits (188), Expect = 6e-39 Identities = 283/403 (70%), Gaps = 12/403 (3%) Strand=Plus/Plus Query 1147 AACAACATGAATCCATACAAAGTATTCCATGCAATCATGTGCTGTCTCAACAAACAAATG 1206 ||||| |||||||| ||| || ||||| ||||||| |||||| ||||||||| || Sbjct 34329577 AACAATCGGAATCCATCTAAAATAAAACATGCGATCATGTACTGTCTAAACAAACAAGTG 34329636 Query 1207 GGCAAAAGAAACACCATTCTACTGTGTGGGCCTGCAAGCACTGGCAAAAGCCTAATAGCA 1266 || |||||||| | ||| || || ||| | ||||| || || ||| |||||| | Sbjct 34329637 GGTAAAAGAAATGCTATTTTATTGCCTGGTCTGGCAAGAACAGGAAAATCTCTAATAACT 34329696 Query 1267 CAAAAAATATGC-CAACTGGTTGGTAATGTTGGTTGCTACAATGCCTCAAATGTAAAC-T 1324 || || || ||| || ||||||||||| |||||||||| || | ||||||| ||| | Sbjct 34329697 CAGAAGAT-TGCTCAGTTGGTTGGTAATATTGGTTGCTAAAACTCAGCAAATGTCAACTT 34329755 Query 1325 TTCCTTTCAATGACTGCAGCAACAAAAATATAATCTGGGTAGAAGAAGCTGGCAACTTTG 1384 |||| || |||||||| | ||| ||||| |||| || || ||||| || ||||||| Sbjct 34329756 TTCCATTTAATGACTGTACCAATAAAAACTTAATTTG---AGTTGAAGCAGGAAACTTTG 34329812 Query 1385 GAGGCCAAGTAAACCAATTCAAAACAATCATGAGTGGCCAATCAATCAGACTTGACCAAA 1444 || |||| || || ||| ||||||| || ||| || |||| |||| Sbjct 34329813 GACAAGAAGTTAATTGGTTTAAACAAATCATGTCAGGACAAATTGTCCATATTGATCAAA 34329872 Query 1445 AAGGAAAAGGCAGTAAAGAAATCCAACCAACTCCAGTCATAATGACTACAAATGAAGACA 1504 |||||||||| ||| ||| || |||| ||| ||||| ||||||||| | Sbjct 34329873 AAGGAAAAGGTTTAAAAACAATTGAATCAAC-----TCACTATGACAACAAATGAAATGA 34329927 Query 1505 TAACCAAAGTAATGATAGGATGTGAACTCAAACCAGA-ACACA 1546 | ||| |||| | ||| |||| | | |||||| ||||| Sbjct 34329928 TCACCTAAGTCCAAACAGGTCATGAATTAAGACCAGACACACA 34329970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15132606225000