Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_001401.2 Length=4679 Score E Sequences producing significant alignments: (Bits) Value seq5 457 3e-125 >seq5 Length=100893473 Score = 457 bits (506), Expect = 3e-125 Identities = 575/782 (74%), Gaps = 8/782 (1%) Strand=Plus/Plus Query 960 CCGGTGATCA-GATCAAAAACT-TCAGCCAGGTACATGGAGCTGGTCGGGTGGCTCGTGG 1017 ||||| |||| || |||| | | |||| | |||||||||||||| ||||| |||| Sbjct 61369975 CCGGTCATCAAGACCAAACAGTCTCAG--AACTACATGGAGCTGGTTAATTGGCTGGTGG 61370032 Query 1018 ACAAGGGGATTACCTCGGAGAAGCAGTGGATCCAGGAGGACCAGGCCTCATACATCTCCT 1077 | || || || || |||||||||||||||||||||||| | || || ||| | || | Sbjct 61370033 AGAACGGCATCACGTCGGAGAAGCAGTGGATCCAGGAGAATCAAAATTCTTACCTGTCTT 61370092 Query 1078 TCAATGCGGCCTCCAACTCGCGGTCCCAAATCAAGGCTGCCTTGGACAATGCGGGAAAGA 1137 |||| ||| | ||||| ||| | ||||| ||| | ||| ||||||| || ||| | Sbjct 61370093 TCAACGCGACTTCCAATGAGCGAGCACAAATTAAGTCAGCCCTGGACAACTCGTCAAAAA 61370152 Query 1138 TTATGAGCCTGACTAAAACCGCCCCCGACTACCTGGTGGGCCAGCAG-CCCGT-GGAGGA 1195 ||||| |||| ||| | ||||| ||||| |||||||| ||| | |||| |||||| Sbjct 61370153 TTATGTCATTGACCAAATCTGCCCCTGACTATCTGGTGGG--AGCCGACCCGCCGGAGGA 61370210 Query 1196 CATTTCCAGCAATCGGATTTATAAAATTTTGGAACTAAACGGGTACGATCCCCAATATGC 1255 || || || | |||||| | | || | | ||| || |||||| ||||| Sbjct 61370211 TCTTACCCAGAACAGAATTTATCAGCTGTTTCAGATGAACAATTATGATCCCGCTTATGC 61370270 Query 1256 GGCTTCCGTCTTTCTGGGATGGGCCACGAAAAAGTTCGGCAAGAGGAACACCATCTGGCT 1315 | ||| | | ||||| ||| || | ||| |||| ||||| || | ||||| Sbjct 61370271 CGGTTCGATTCTGCTGGGCTGGTGTGAGAGATCTTTCAACAAGCGGAACGCCGTTTGGCT 61370330 Query 1316 GTTTGGGCCTGCAACTACCGGGAAGACCAACATCGCGGAGGCCATAGCCCACACTGTGCC 1375 |||||||| || ||||| || ||||||||| | || || ||||| || ||||| |||| Sbjct 61370331 ATTTGGGCCCGCCACTACAGGAAAGACCAACCTGGCCGAAGCCATCGCTCACACCATGCC 61370390 Query 1376 CTTCTACGGGTGCGTAAACTGGACCAATGAGAACTTTCCCTTCAACGACTGTGTCGACAA 1435 |||||||| || ||||| ||||||||||||||||||||||||||| |||| |||| || Sbjct 61370391 TTTCTACGGCTGTGTAAATTGGACCAATGAGAACTTTCCCTTCAACAACTGCTTCGATAA 61370450 Query 1436 GATGGTGATCTGGTGGGAGGAGGGGAAGATGACCGCCAAGGTCGTGGAGTCGGCCAAAGC 1495 |||| | ||||||||||||| |||||||||||| ||||||||||||||| | |||||||| Sbjct 61370451 GATGCTCATCTGGTGGGAGGCGGGGAAGATGACGGCCAAGGTCGTGGAGCCCGCCAAAGC 61370510 Query 1496 CATTCTCGGAGGAAGCAAGGTGCGCGTGGACCAGAAATGCAAGTCCTCGGCCCAGATAGA 1555 ||| |||| ||| ||||||||||||||||||||| |||||| ||| ||||| || Sbjct 61370511 CATCTTCGGTGGATCCAAGGTGCGCGTGGACCAGAAGTGCAAGGTTTCGCAGCAGATCGA 61370570 Query 1556 CCCGACTCCCGTGATCGTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACTC 1615 | | || || || ||| |||| || |||| |||||||| ||| | || || || || Sbjct 61370571 CGCTACGCCAGTCATCATCACGTCGAACAGGGACATGTGCATGGTGGTGGATGGAAATTC 61370630 Query 1616 AACGACCTTCGAACACCAGCAGCCGTTGCAAGACCGGATGTTCAAATTTGAACTCACCCG 1675 || || || |||||| | || || ||| | ||| | ||||||| |||| | || Sbjct 61370631 TACCACTTTTGAACACAAACAACCTTTGGAGGACAGAATGTTCAGGTTTGTCTTTTCCAA 61370690 Query 1676 CCGTCTGGATCATGACTTTGGGAAGGTCACCAAGCAGGAAGTCAAAGACTTTTTCCGGTG 1735 | ||||| | |||||||||||| | || |||| ||| || ||||| ||||| ||| Sbjct 61370691 AAGACTGGAACCTGACTTTGGGAAAATTACTAAGCGGGAGGTGAAAGAATTTTTTAAGTG 61370750 Query 1736 GG 1737 || Sbjct 61370751 GG 61370752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14860417705920