Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_001701.1 Length=5106 Score E Sequences producing significant alignments: (Bits) Value seq5 187 8e-44 >seq5 Length=100893473 Score = 187 bits (206), Expect = 8e-44 Identities = 323/467 (69%), Gaps = 2/467 (0%) Strand=Plus/Plus Query 1494 GGCTGG-GTGAAGAGAGAGTTCAACAAAAGAAACGCCATATGGCTCTACGGACCTGCCAC 1552 |||||| |||| |||| |||||||| | |||||| | ||||| | || || ||||| Sbjct 61370287 GGCTGGTGTGA-GAGATCTTTCAACAAGCGGAACGCCGTTTGGCTATTTGGGCCCGCCAC 61370345 Query 1553 CACCGGGAAGACCAACATTGCAGAAGCTATTGCCCATGCTGTACCCTTCTATGGCTGTGT 1612 || || ||||||||| | || ||||| || || || | | || ||||| |||||||| Sbjct 61370346 TACAGGAAAGACCAACCTGGCCGAAGCCATCGCTCACACCATGCCTTTCTACGGCTGTGT 61370405 Query 1613 TAACTGGACTAATGAGAACTTTCCTTTTAATGATTGTGTTGATAAAATGCTGATTTGGTG 1672 || ||||| |||||||||||||| || || | || | ||||| ||||| || ||||| Sbjct 61370406 AAATTGGACCAATGAGAACTTTCCCTTCAACAACTGCTTCGATAAGATGCTCATCTGGTG 61370465 Query 1673 GGAGGAGGGAAAAATGACTAATAAGGTTGTTGAATCTGCAAAAGCAATTTTGGGAGGGTC 1732 ||||| ||| || ||||| ||||| || || | || ||||| || || || || || Sbjct 61370466 GGAGGCGGGGAAGATGACGGCCAAGGTCGTGGAGCCCGCCAAAGCCATCTTCGGTGGATC 61370525 Query 1733 TGCTGTCCGGGTAGACCAGAAATGTAAAGGATCTGTTTGTATTGAACCTACTCCTGTAAT 1792 || || || |||||||| || || | || || || |||| || || || Sbjct 61370526 CAAGGTGCGCGTGGACCAGAAGTGCAAGGTTTCGCAGCAGATCGACGCTACGCCAGTCAT 61370585 Query 1793 TATTACTAGTAATACTGATATGTGTATGATTGTTGATGGCAACTCTACTACAATGGAACA 1852 || || || | || ||||| ||| | || ||||| || ||||| || | ||||| Sbjct 61370586 CATCACGTCGAACAGGGACATGTGCATGGTGGTGGATGGAAATTCTACCACTTTTGAACA 61370645 Query 1853 TAGAATACCATTAGAGGAGCGTATGTTTCAAATTGTCCTATCACATAAATTGGAGCCTTC 1912 | | ||| || ||||| | ||||| ||||| | || | | | |||| ||| Sbjct 61370646 CAAACAACCTTTGGAGGACAGAATGTTCAGGTTTGTCTTTTCCAAAAGACTGGAACCTGA 61370705 Query 1913 TTTTGGAAAAATTTCTAAAAAAGAAGTCAGAGAATTTTTCAAATGGG 1959 ||||| |||||| |||| || || | ||||||||| || |||| Sbjct 61370706 CTTTGGGAAAATTACTAAGCGGGAGGTGAAAGAATTTTTTAAGTGGG 61370752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16226782555280