Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_001729.1 Length=4726 Score E Sequences producing significant alignments: (Bits) Value seq5 408 1e-110 >seq5 Length=100893473 Score = 408 bits (452), Expect = 1e-110 Identities = 562/781 (72%), Gaps = 6/781 (1%) Strand=Plus/Plus Query 957 CCGGTCATCAGGTCAAAAAC--CTCAGCCAGGTACATGGAGCTGGTCGGGTGGCTGGTGG 1014 |||||||||| | | ||| ||||| | |||||||||||||| |||||||||| Sbjct 61369975 CCGGTCATCAAGACCAAACAGTCTCAG--AACTACATGGAGCTGGTTAATTGGCTGGTGG 61370032 Query 1015 ACCGCGGGATCACGTCAGAAAAGCAATGGATTCAGGAGGACCAGGCCTCGTACATCTCCT 1074 | ||| |||||||| || ||||| ||||| |||||| | || || ||| | || | Sbjct 61370033 AGAACGGCATCACGTCGGAGAAGCAGTGGATCCAGGAGAATCAAAATTCTTACCTGTCTT 61370092 Query 1075 TCAACGCCGCCTCCAACTCGCGGTCCCAGATCAAGGCCGCGCTGGACAATGCCTCCAAGA 1134 ||||||| | ||||| ||| | || || ||| | || |||||||| | || || | Sbjct 61370093 TCAACGCGACTTCCAATGAGCGAGCACAAATTAAGTCAGCCCTGGACAACTCGTCAAAAA 61370152 Query 1135 TCATGAGCCTGACAAAGACGGCTCCGGACTACCTGGTGGGCAGCAACCCGCCGGAGGACA 1194 | ||| |||| || | || || ||||| |||||||| | ||||||||||||| Sbjct 61370153 TTATGTCATTGACCAAATCTGCCCCTGACTATCTGGTGGGAGCCGACCCGCCGGAGGATC 61370212 Query 1195 TTACCAAAAATCGGATCTACCAAATCCTGGAGCTGAACGGGTACGATCCGCAGTACGCGG 1254 ||||| | || | || || || | | || ||||| || ||||| || || | Sbjct 61370213 TTACCCAGAACAGAATTTATCAGCTGTTTCAGATGAACAATTATGATCCCGCTTATGCCG 61370272 Query 1255 CCTCCGTCTTCCTGGGCTGGGCGCAAAAGAAGTT-CGGGAAGAGGAACACCATCTGGCTC 1313 || | | ||||||||| | | ||| || | ||| ||||| || | ||||| Sbjct 61370273 GTTCGATTCTGCTGGGCTGGT-GTGAGAGATCTTTCAACAAGCGGAACGCCGTTTGGCTA 61370331 Query 1314 TTTGGGCCGGCCACGACGGGTAAAACCAACATCGCGGAAGCCATCGCCCACGCCGTGCCC 1373 |||||||| ||||| || || || |||||| | || ||||||||||| ||| || |||| Sbjct 61370332 TTTGGGCCCGCCACTACAGGAAAGACCAACCTGGCCGAAGCCATCGCTCACACCATGCCT 61370391 Query 1374 TTCTACGGCTGCGTAAACTGGACCAATGAGAACTTTCCCTTCAACGATTGCGTCGACAAG 1433 ||||||||||| ||||| ||||||||||||||||||||||||||| | ||| |||| ||| Sbjct 61370392 TTCTACGGCTGTGTAAATTGGACCAATGAGAACTTTCCCTTCAACAACTGCTTCGATAAG 61370451 Query 1434 ATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGAGCGCCAAGGCC 1493 ||| | ||||||||||||| ||| |||||||||||||||||||||||| |||||| ||| Sbjct 61370452 ATGCTCATCTGGTGGGAGGCGGGGAAGATGACGGCCAAGGTCGTGGAGCCCGCCAAAGCC 61370511 Query 1494 ATTCTGGGCGGAAGCAAGGTGCGCGTGGACCAAAAGTGCAAGTCATCGGCCCAGATCGAA 1553 || | || ||| |||||||||||||||||| ||||||||| ||| |||||||| Sbjct 61370512 ATCTTCGGTGGATCCAAGGTGCGCGTGGACCAGAAGTGCAAGGTTTCGCAGCAGATCGAC 61370571 Query 1554 CCCACTCCCGTGATCGTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACAGC 1613 | || || || ||| |||| || |||| |||||||| ||| | || || || Sbjct 61370572 GCTACGCCAGTCATCATCACGTCGAACAGGGACATGTGCATGGTGGTGGATGGAAATTCT 61370631 Query 1614 ACCACCTTCGAGCATCAGCAGCCGCTGCAGGACCGGATGTTTGAATTTGAACTTACCCGC 1673 ||||| || || || | || || || ||||| | ||||| |||| || || Sbjct 61370632 ACCACTTTTGAACACAAACAACCTTTGGAGGACAGAATGTTCAGGTTTGTCTTTTCCAAA 61370691 Query 1674 CGTTTGGACCATGACTTTGGGAAGGTCACCAAACAGGAAGTAAAGGACTTTTTCCGGTGG 1733 | |||| | |||||||||||| | || || | ||| || || || ||||| |||| Sbjct 61370692 AGACTGGAACCTGACTTTGGGAAAATTACTAAGCGGGAGGTGAAAGAATTTTTTAAGTGG 61370751 Query 1734 G 1734 | Sbjct 61370752 G 61370752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15010813836880