Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_001829.1 Length=4767 Score E Sequences producing significant alignments: (Bits) Value seq5 452 1e-123 >seq5 Length=100893473 Score = 452 bits (500), Expect = 1e-123 Identities = 551/749 (74%), Gaps = 2/749 (0%) Strand=Plus/Plus Query 1041 TACATGGAGCTGGTCGGGTGGCTGGTGGACCGCGGGATCACGTCAGAAAAGCAATGGATC 1100 |||||||||||||| ||||||||||| ||| |||||||| || ||||| |||||| Sbjct 61370005 TACATGGAGCTGGTTAATTGGCTGGTGGAGAACGGCATCACGTCGGAGAAGCAGTGGATC 61370064 Query 1101 CAGGAGGACCAGGCGTCCTACATCTCCTTCAACGCCGCCTCCAACTCGCGGTCACAAATC 1160 |||||| | || || ||| | || |||||||| | ||||| ||| ||||||| Sbjct 61370065 CAGGAGAATCAAAATTCTTACCTGTCTTTCAACGCGACTTCCAATGAGCGAGCACAAATT 61370124 Query 1161 AAGGCCGCGCTGGACAATGCCTCCAAAATCATGAGCCTGACAAAGACGGCTCCGGACTAC 1220 ||| | || |||||||| | || ||||| ||| |||| || | || || ||||| Sbjct 61370125 AAGTCAGCCCTGGACAACTCGTCAAAAATTATGTCATTGACCAAATCTGCCCCTGACTAT 61370184 Query 1221 CTGGTGGGCCAGAACCCGCCGGAGGACATTTCCAGCAACCGCATCTACCGAATCCTCGAG 1280 |||||||| ||||||||||||| || || ||| | || || | | | || Sbjct 61370185 CTGGTGGGAGCCGACCCGCCGGAGGATCTTACCCAGAACAGAATTTATCAGCTGTTTCAG 61370244 Query 1281 ATGAACGGGTACGATCCGCAGTACGCGGCCTCCGTCTTCCTGGGCTGGGCGCAAAAGAAG 1340 |||||| || ||||| || || | || | | ||||||||| | | ||| Sbjct 61370245 ATGAACAATTATGATCCCGCTTATGCCGGTTCGATTCTGCTGGGCTGGT-GTGAGAGATC 61370303 Query 1341 TT-CGGGAAGAGGAACACCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAACAT 1399 || | ||| ||||| || | ||||| |||||||| ||||| || || || |||||| | Sbjct 61370304 TTTCAACAAGCGGAACGCCGTTTGGCTATTTGGGCCCGCCACTACAGGAAAGACCAACCT 61370363 Query 1400 CGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTGAACTGGACCAATGAGAA 1459 || ||||||||||| ||| || |||| ||||||||||| || || |||||||||||||| Sbjct 61370364 GGCCGAAGCCATCGCTCACACCATGCCTTTCTACGGCTGTGTAAATTGGACCAATGAGAA 61370423 Query 1460 CTTTCCGTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGAC 1519 |||||| |||||| | ||| |||| |||||| | ||||||||||||| ||| |||||||| Sbjct 61370424 CTTTCCCTTCAACAACTGCTTCGATAAGATGCTCATCTGGTGGGAGGCGGGGAAGATGAC 61370483 Query 1520 GGCCAAGGTCGTAGAGAGCGCCAAGGCCATCCTGGGCGGAAGCAAGGTGCGCGTGGACCA 1579 |||||||||||| ||| |||||| |||||| | || ||| |||||||||||||||||| Sbjct 61370484 GGCCAAGGTCGTGGAGCCCGCCAAAGCCATCTTCGGTGGATCCAAGGTGCGCGTGGACCA 61370543 Query 1580 AAAGTGCAAGTCATCGGCCCAGATCGACCCAACTCCCGTGATCGTCACCTCCAACACCAA 1639 ||||||||| ||| ||||||||| | || || || ||| |||| || |||| | Sbjct 61370544 GAAGTGCAAGGTTTCGCAGCAGATCGACGCTACGCCAGTCATCATCACGTCGAACAGGGA 61370603 Query 1640 CATGTGCGCGGTCATCGACGGAAACTCGACCACCTTCGAGCACCAACAACCACTCCAGGA 1699 ||||||| ||| | || ||||| || ||||| || || ||| ||||||| | |||| Sbjct 61370604 CATGTGCATGGTGGTGGATGGAAATTCTACCACTTTTGAACACAAACAACCTTTGGAGGA 61370663 Query 1700 CCGGATGTTCAAGTTCGAGCTCACCAAGCGCCTGGAGCACGACTTTGGCAAGGTCACCAA 1759 | | ||||||| ||| | | |||| | ||||| | |||||||| || | || || Sbjct 61370664 CAGAATGTTCAGGTTTGTCTTTTCCAAAAGACTGGAACCTGACTTTGGGAAAATTACTAA 61370723 Query 1760 GCAGGAAGTCAAAGACTTTTTCCGGTGGG 1788 || ||| || ||||| ||||| ||||| Sbjct 61370724 GCGGGAGGTGAAAGAATTTTTTAAGTGGG 61370752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15142010461760