Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_002077.1 Length=4718 Score E Sequences producing significant alignments: (Bits) Value seq5 441 2e-120 >seq5 Length=100893473 Score = 441 bits (488), Expect = 2e-120 Identities = 817/1186 (69%), Gaps = 37/1186 (3%) Strand=Plus/Plus Query 566 TTCTTTGTTCAGTTCGAGAA-GGGCGAG-TCCTACTTCCACCTCCATATTCTGGTGGAGA 623 || ||||||||| | || || ||| || | ||| ||| ||||| ||| |||| Sbjct 61369588 TTTTTTGTTCAGCTGGAAAAAGGGACAGATTTTAC--CCATCTCCACTGCCTGTTGGAAG 61369645 Query 624 CCACGGGGGTCAAATCCATGGTGCTGGGCCGCTTCCTGAGTCAGATTAGGGACAAGCTGG 683 || || |||||||| ||||| | || | | ||||| |||||||| || || || Sbjct 61369646 CCGATGGAGTCAAATCTATGGTAGTCGGAAGGTACCTGAATCAGATTAAAGAAAATTTGA 61369705 Query 684 TGCAGACCATCTACCGCGGGATCGAGCCGACCCTGCCCAACTGGTTCGCGGTGACCAAGA 743 | || ||| || || || || || | |||| || ||| | |||| |||||| | Sbjct 61369706 TCAAGCGTGTCTTTCGTGGAATTGAACCAAAAGTGCCAAATTGGCTGGCGGCGACCAAAA 61369765 Query 744 CGCGTAATGGCGCCGGAGGGGGGAACAAGGTGGTGGACG--AGTGCTACATCCCCAACTA 801 | || | ||||| | || ||| | | || || |||| |||||| ||| Sbjct 61369766 CC---AAGTCCAAAGGAGGAGCCAATAAGCT--TCGATCTCAGAGCTATATCCCCGCCTA 61369820 Query 802 CCTCCTGCCCAAGACTCAGCCCGAGCTGCAGTGGGCGTGGACTAACATGGAGGAGTATAT 861 | | || || |||| || || || |||||||||||||||||||||| || | ||||| Sbjct 61369821 CTTGCTTCCAAAGAGCCAACCAGAATTGCAGTGGGCGTGGACTAACATCGAAGGGTATAA 61369880 Query 862 AAGCGCCTGTTTGAACCTGGCCGAGC--GCAAACGGCTCGTGGCGCAGCACCTGACCCAC 919 || || |||| |||| |||| || | | ||| | ||| ||||| || | Sbjct 61369881 AAAAGCGACGTTGACCCTGAGTGAGCTAGCCA--GACTCCTCGCGGAGCACG-GAGC--- 61369934 Query 920 GTCAGCCAGACCCAGGA--GCAGAACAAGGAGAATCTGAACCCCAATTCTGACGCGCCTG 977 |||| |||||| | || | | | || | |||| ||| || | Sbjct 61369935 GTCA---AGACCCGCGTCTGCCGGTCT-GCAG--TTTGAAA----------ACGGTCCGG 61369978 Query 978 TCATCCGGTCAAAAACCTCCGCGCGCTACATGGAGCTGGTCGGGTGGCTGGTGGACCGGG 1037 ||||| | | ||| || | ||||||||||||||| ||||||||||| | Sbjct 61369979 TCATCAAGACCAAACAGTCTCAGAACTACATGGAGCTGGTTAATTGGCTGGTGGAGAACG 61370038 Query 1038 GCATCACCTCCGAGAAGCAGTGGATCCAGGAGGACCAGGCCTCGTACATCTCCTTCAACG 1097 ||||||| || ||||||||||||||||||||| | || || ||| | || ||||||| Sbjct 61370039 GCATCACGTCGGAGAAGCAGTGGATCCAGGAGAATCAAAATTCTTACCTGTCTTTCAACG 61370098 Query 1098 CCGCTTCCAACTCGCGGTCCCAGATCAAGGCCGCTCTGGACAATGCCGGCAAGATCATGG 1157 | ||||||| ||| | || || ||| | || |||||||| | || || ||| Sbjct 61370099 CGACTTCCAATGAGCGAGCACAAATTAAGTCAGCCCTGGACAACTCGTCAAAAATTATGT 61370158 Query 1158 CGCTGACCAAATCCGCGCCCGACTACCTGGTAGGCCCCGCTCCGCCCGCGGACATTAAAA 1217 | |||||||||| || || ||||| ||||| || ||| ||||| | ||| ||| Sbjct 61370159 CATTGACCAAATCTGCCCCTGACTATCTGGTGGGAGCCGACCCGCCGGAGGATCTTACCC 61370218 Query 1218 CCAACCGCATCTACCGCATCCTGGAGCTGAACGGCTACGAACCTGCCTACGCCGGCTCCG 1277 ||| | || || | | | || ||||| || || || || || ||||| || Sbjct 61370219 AGAACAGAATTTATCAGCTGTTTCAGATGAACAATTATGATCCCGCTTATGCCGGTTCGA 61370278 Query 1278 TCTTTCTCGGCTGGGCCCAGAAAAGGTTCGGGAAGCGCAACACCATCTGGCTGTTTGGGC 1337 | | || |||||| ||| | ||| ||||| ||| || | ||||| ||||||| Sbjct 61370279 TTCTGCTGGGCTGGTGTGAGAGATCTTTCAACAAGCGGAACGCCGTTTGGCTATTTGGGC 61370338 Query 1338 CGGCCACCACGGGCAAGACCAACATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACG 1397 | ||||| || || ||||||||| | || ||||||||||| ||| || |||| ||||||| Sbjct 61370339 CCGCCACTACAGGAAAGACCAACCTGGCCGAAGCCATCGCTCACACCATGCCTTTCTACG 61370398 Query 1398 GCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCAATGATTGCGTCGACAAGATGGTGA 1457 |||| || || |||||||||||||||||||||||||| | ||| |||| |||||| | | Sbjct 61370399 GCTGTGTAAATTGGACCAATGAGAACTTTCCCTTCAACAACTGCTTCGATAAGATGCTCA 61370458 Query 1458 TCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCG 1517 |||||||||||| ||| |||||||||||||||||||||||| ||||||| ||||| ||| Sbjct 61370459 TCTGGTGGGAGGCGGGGAAGATGACGGCCAAGGTCGTGGAGCCCGCCAAAGCCATCTTCG 61370518 Query 1518 GCGGCAGCAAGGTGCGCGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCC 1577 | || |||||||||||||||||| ||||||||| || ||||||||| | || | Sbjct 61370519 GTGGATCCAAGGTGCGCGTGGACCAGAAGTGCAAGGTTTCGCAGCAGATCGACGCTACGC 61370578 Query 1578 CCGTGATCGTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACCT 1637 | || ||| |||| || |||| |||||||| ||| | || || || ||||| | Sbjct 61370579 CAGTCATCATCACGTCGAACAGGGACATGTGCATGGTGGTGGATGGAAATTCTACCACTT 61370638 Query 1638 TCGAGCACCAGCAGCCGTTGCAGGACCGGATGTTCAAATTTGAACTCACCCGCCGTCTGG 1697 | || ||| | || || ||| ||||| | ||||||| |||| | || | |||| Sbjct 61370639 TTGAACACAAACAACCTTTGGAGGACAGAATGTTCAGGTTTGTCTTTTCCAAAAGACTGG 61370698 Query 1698 AGCATGACTTTGGCAAGGTGACAAAGCAGGAAGTCAAAGAGTTCTT 1743 | | ||||||||| || | || |||| ||| || ||||| || || Sbjct 61370699 AACCTGACTTTGGGAAAATTACTAAGCGGGAGGTGAAAGAATTTTT 61370744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14985214495440