Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq5 205 3e-49 >seq5 Length=100893473 Score = 205 bits (226), Expect = 3e-49 Identities = 263/363 (72%), Gaps = 0/363 (0%) Strand=Plus/Plus Query 1218 CAAGCGAAACACGCTGTGGCTGTTCGGACATGCGACCACCGGCAAGACCAACATCGCGGA 1277 |||||| ||| | | ||||| || || | || || || || ||||||||| | || || Sbjct 61370310 CAAGCGGAACGCCGTTTGGCTATTTGGGCCCGCCACTACAGGAAAGACCAACCTGGCCGA 61370369 Query 1278 GGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTTAACTGGACCAACGAGAACTTTCC 1337 || || || || | |||| ||||| || || || || |||||||| ||||||||||| Sbjct 61370370 AGCCATCGCTCACACCATGCCTTTCTACGGCTGTGTAAATTGGACCAATGAGAACTTTCC 61370429 Query 1338 GTTCAACGACTGCGTCGAAAAAATGATTATCTGGTGGGAGGAGGGCAAAATGACCGCCAA 1397 |||||| ||||| |||| || ||| | ||||||||||||| ||| || ||||| ||||| Sbjct 61370430 CTTCAACAACTGCTTCGATAAGATGCTCATCTGGTGGGAGGCGGGGAAGATGACGGCCAA 61370489 Query 1398 AGTGGTGGAAACAGCCAAGGCGATTCTGGGAGGATCTCGGGTGAGAGTGGACCAAAAATG 1457 || ||||| | ||||| || || | || ||||| |||| | |||||||| || || Sbjct 61370490 GGTCGTGGAGCCCGCCAAAGCCATCTTCGGTGGATCCAAGGTGCGCGTGGACCAGAAGTG 61370549 Query 1458 CAAAGCTTCGGTTCCGATCGAACCGACGCCGGTCATTATTACCAGTAACACCAACATGTG 1517 ||| | |||| | |||||| | ||||| ||||| || || |||| ||||||| Sbjct 61370550 CAAGGTTTCGCAGCAGATCGACGCTACGCCAGTCATCATCACGTCGAACAGGGACATGTG 61370609 Query 1518 TTATGTCATCGACGGGAACACGACCACGTTCGAGCATAAGCAGCCGTTGGAGGACAGGAT 1577 || | || || || | ||||| || || || || || || ||||||||||| || Sbjct 61370610 CATGGTGGTGGATGGAAATTCTACCACTTTTGAACACAAACAACCTTTGGAGGACAGAAT 61370669 Query 1578 GTT 1580 ||| Sbjct 61370670 GTT 61370672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14908416471120