Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_005889.1 Length=4693 Score E Sequences producing significant alignments: (Bits) Value seq5 394 3e-106 >seq5 Length=100893473 Score = 394 bits (436), Expect = 3e-106 Identities = 692/999 (69%), Gaps = 39/999 (4%) Strand=Plus/Plus Query 779 AAGGGCGGAGCCAATAAGGTGGTGGAT-TCTGGG-TATATTCCCGCCTACCTGCTGCCGA 836 || || |||||||||||| | | ||| || | | ||||| ||||||||| |||| || | Sbjct 61369774 AAAGGAGGAGCCAATAAGCT--TCGATCTCAGAGCTATATCCCCGCCTACTTGCTTCCAA 61369831 Query 837 AGGTCCAACCAGAGCTTCAGTGGGCGTGGACTAACCTCGAAGAGTATAAATTGGCCGCCC 896 || ||||||||| | |||||||||||||||||| |||||| ||||||| || | Sbjct 61369832 AGAGCCAACCAGAATTGCAGTGGGCGTGGACTAACATCGAAGGGTATAAAAAAGCGACGT 61369891 Query 897 TCAATCTGGAGGAGC--GCAAACGGCTCGTCGCTCAGTTTCAGCTTGAGTCCTCGCAGCG 954 | | ||| |||| || | | ||| |||| || | || |||| Sbjct 61369892 TGACCCTGAGTGAGCTAGCCA--GACTCCTCGCGGAG--------------CACGGAGCG 61369935 Query 955 CTCGCAAGAG--GCATCTTCCCAGAGGGACGTTTCGGCTGAC---CCGGTCATCAAGAGC 1009 ||||| || ||| || | | |||| | || ||||||||||||| | Sbjct 61369936 T---CAAGACCCGCGTCTGCCGGTCTGCA-GTTT--GAAAACGGTCCGGTCATCAAGACC 61369989 Query 1010 AAGACTTCCCAGAAATACATGGCGCTGGTAAGCTGGCTGGTGGAACATGGCATCACTTCC 1069 || || ||||| ||||||| |||||| | ||||||||||| | |||||||| || Sbjct 61369990 AAACAGTCTCAGAACTACATGGAGCTGGTTAATTGGCTGGTGGAGAACGGCATCACGTCG 61370049 Query 1070 GAGAAGCAGTGGATTCAGGAGAATCAGGAGAGCTACCTGTCCTTCAACTCCACGGGAAAC 1129 |||||||||||||| ||||||||||| | |||||||| |||||| | || || Sbjct 61370050 GAGAAGCAGTGGATCCAGGAGAATCAAAATTCTTACCTGTCTTTCAACGCGACTTCCAAT 61370109 Query 1130 TCTCGGAGC-CAGATTAAAGCCGCGCTTGACAACGCGTCAAAAATTATGAGTCTGACCAA 1188 || ||| || ||||| | || || |||||| |||||||||||||| ||||||| Sbjct 61370110 GAGCG-AGCACAAATTAAGTCAGCCCTGGACAACTCGTCAAAAATTATGTCATTGACCAA 61370168 Query 1189 ATCTGCCTCAGACTATCTCGTGGGA-CAGACTGTTCCAGAGGACATTTCTGAAAACAGAA 1247 ||||||| | |||||||| |||||| | ||| || ||||| || | | ||||||| Sbjct 61370169 ATCTGCCCCTGACTATCTGGTGGGAGCCGACCCG-CCGGAGGATCTTACCCAGAACAGAA 61370227 Query 1248 TCTGGCAGATTTTTGATCTCAACGGCTACGACCCGGCATACGCGGGCTCTGTTCTCTACG 1307 | | ||| | ||| | | ||| || || || || || || || || |||| | Sbjct 61370228 TTTATCAGCTGTTTCAGATGAACAATTATGATCCCGCTTATGCCGGTTCGATTCTGCTGG 61370287 Query 1308 GCTGGTGCACTCGCGCCTTTGGAAAGAGGAACACCGTCTGGCTGTATGGACCCGCGACCA 1367 ||||||| | | || ||| ||||| |||| ||||| | ||| ||||| || | Sbjct 61370288 GCTGGTGTGAGAGATCTTTCAACAAGCGGAACGCCGTTTGGCTATTTGGGCCCGCCACTA 61370347 Query 1368 CCGGAAAGACCAACATCGCGGAAGCCATCTCTCACACCGTGCCCTTTTATGGCTGTGTGA 1427 | |||||||||||| | || ||||||||| |||||||| |||| || || |||||||| | Sbjct 61370348 CAGGAAAGACCAACCTGGCCGAAGCCATCGCTCACACCATGCCTTTCTACGGCTGTGTAA 61370407 Query 1428 ACTGGACTAATGAGAACTTNNNNNNNNNNNNNNNNNNNGAAAAAATGTTGATCTGGTGGG 1487 | ||||| ||||||||||| || || ||| | |||||||||| Sbjct 61370408 ATTGGACCAATGAGAACTTTCCCTTCAACAACTGCTTCGATAAGATGCTCATCTGGTGGG 61370467 Query 1488 AGGAGGGAAAGATGACCAGCAAGGTGGTGGAACCCGCCAAGGCCATCTTgggggggTCTA 1547 ||| ||| |||||||| |||||| ||||| |||||||| |||||||| || || || | Sbjct 61370468 AGGCGGGGAAGATGACGGCCAAGGTCGTGGAGCCCGCCAAAGCCATCTTCGGTGGATCCA 61370527 Query 1548 GAGTACGAGTGGATCAAAAATGTAAATCCTCTGTACAAGTAGACTCTACCCCGGTGATTA 1607 || || ||||| || || || || || || | ||| |||| || || || | Sbjct 61370528 AGGTGCGCGTGGACCAGAAGTGCAAGGTTTCGCAGCAGATCGACGCTACGCCAGTCATCA 61370587 Query 1608 TCACCTCCAATACTAACATGTGTGTGGTGGTGGATGGGAACTCCACGACCTTTGAACACC 1667 |||| || || | ||||||| ||||||||||||| || || || || ||||||||| Sbjct 61370588 TCACGTCGAACAGGGACATGTGCATGGTGGTGGATGGAAATTCTACCACTTTTGAACACA 61370647 Query 1668 AGCAGCCGCTGGAAGACCGCATGTTCAGATTTGAACTCATGC-GGCGGCTCCCGCCAGAT 1726 | || || |||| ||| | |||||||| |||| || | | | || || || Sbjct 61370648 AACAACCTTTGGAGGACAGAATGTTCAGGTTTG-TCTTTTCCAAAAGACTGGAACCTGAC 61370706 Query 1727 TTTGGCAAGATTACCAAGCAGGAAGTCAAAGACTTTTTT 1765 ||||| || ||||| |||| ||| || ||||| |||||| Sbjct 61370707 TTTGGGAAAATTACTAAGCGGGAGGTGAAAGAATTTTTT 61370745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14905216553440