Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_006147.2 Length=5132 Score E Sequences producing significant alignments: (Bits) Value seq5 208 2e-50 >seq5 Length=100893473 Score = 208 bits (230), Expect = 2e-50 Identities = 286/397 (72%), Gaps = 2/397 (1%) Strand=Plus/Plus Query 1523 TTCAACAAAAGAAATGCCATATGGCTCTACGGACCTGCGACCACCGGAAAGACCAACATA 1582 |||||||| | || ||| | ||||| | || || || || || |||||||||||| | Sbjct 61370305 TTCAACAAGCGGAACGCCGTTTGGCTATTTGGGCCCGCCACTACAGGAAAGACCAACCTG 61370364 Query 1583 GCCGAGGCTATTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAATGAGAAC 1642 ||||| || || || || | | || ||||| |||||||| || ||||| ||||||||| Sbjct 61370365 GCCGAAGCCATCGCTCACACCATGCCTTTCTACGGCTGTGTAAATTGGACCAATGAGAAC 61370424 Query 1643 TTCCCATTTAATGACTGCGTTGATAAAATGCTTATATGGTGGGAGGAGGGAAAAATGACC 1702 || || || || ||||| | ||||| ||||| || |||||||||| ||| || ||||| Sbjct 61370425 TTTCCCTTCAACAACTGCTTCGATAAGATGCTCATCTGGTGGGAGGCGGGGAAGATGACG 61370484 Query 1703 AATAAAGTAGTGGAATCCGCAAAAGCGATACTgggggggTCTGCTGTACGAGTTGATCAA 1762 || || ||||| |||| ||||| || | || || || || || || || || Sbjct 61370485 GCCAAGGTCGTGGAGCCCGCCAAAGCCATCTTCGGTGGATCCAAGGTGCGCGTGGACCAG 61370544 Query 1763 AAGTGTAAGGGGTCTGTTTGTATTGAACCTACTCCTGTAATAATTACCAGTAATACTGAT 1822 ||||| |||| || || || |||| || || || || || || | || Sbjct 61370545 AAGTGCAAGGTTTCGCAGCAGATCGACGCTACGCCAGTCATCATCACGTCGAACAGGGAC 61370604 Query 1823 ATGTGCATGATTGTGGATGGAAATTCTACTACAATGGAACACAGAATTCCTTTGGAGGAA 1882 ||||||||| | ||||||||||||||||| || | ||||||| | ||||||||||| Sbjct 61370605 ATGTGCATGGTGGTGGATGGAAATTCTACCACTTTTGAACACAAACAACCTTTGGAGGAC 61370664 Query 1883 AGAATGTTCCAGATTGTTCTTTCCCATAAG-CTGGAA 1918 |||||||| ||| || ||||| ||| ||| |||||| Sbjct 61370665 AGAATGTT-CAGGTTTGTCTTTTCCAAAAGACTGGAA 61370700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16309980414960