Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_006148.1 Length=4432 Score E Sequences producing significant alignments: (Bits) Value seq5 84.2 6e-13 >seq5 Length=100893473 Score = 84.2 bits (92), Expect = 6e-13 Identities = 141/204 (69%), Gaps = 10/204 (5%) Strand=Plus/Plus Query 1280 CAAGAGAAACACCATCTGGCTGTATGGTCCAGCTACTACCGGCAAAACCATCATCGCTCA 1339 |||| | ||| || | ||||| | ||| || || ||||| || || |||| | | || | Sbjct 61370310 CAAGCGGAACGCCGTTTGGCTATTTGGGCCCGCCACTACAGGAAAGACCAACCTGGCCGA 61370369 Query 1340 AGCTATTGCACA-----TGCTGTTAAACTGTTTGCTGGTGTTAATTGGACTAATGAAAAC 1394 ||| || || || ||| || || | | |||| |||||||| ||||| ||| Sbjct 61370370 AGCCATCGCTCACACCATGCCTTTCTACGGCT-----GTGTAAATTGGACCAATGAGAAC 61370424 Query 1395 TTTCCCTTCTGTAACTGTCCAGGGAAACTGCTTATCTGGTGGGAGGAGGGCAAGATGACA 1454 ||||||||| ||||| | || |||| ||||||||||||| ||| |||||||| Sbjct 61370425 TTTCCCTTCAACAACTGCTTCGATAAGATGCTCATCTGGTGGGAGGCGGGGAAGATGACG 61370484 Query 1455 AACAAAATGGTGGAGACGGCTAAA 1478 ||| | |||||| | || ||| Sbjct 61370485 GCCAAGGTCGTGGAGCCCGCCAAA 61370508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14070038038960