Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq5 425 2e-115 >seq5 Length=100893473 Score = 425 bits (470), Expect = 2e-115 Identities = 700/995 (70%), Gaps = 31/995 (3%) Strand=Plus/Plus Query 770 AAGGGCGGAGCCAATAAGGTGGTGGAT-TCTGGG-TATATTCCCGCCTACCTGCTGCCGA 827 || || |||||||||||| | | ||| || | | ||||| ||||||||| |||| || | Sbjct 61369774 AAAGGAGGAGCCAATAAGCT--TCGATCTCAGAGCTATATCCCCGCCTACTTGCTTCCAA 61369831 Query 828 AGGTCCAACCGGAGCTTCAGTGGGCGTGGACAAACCTGGACGAGTATAAATTGGCCGCCC 887 || |||||| || | |||||||||||||| ||| | || | ||||||| || | Sbjct 61369832 AGAGCCAACCAGAATTGCAGTGGGCGTGGACTAACATCGAAGGGTATAAAAAAGCGACGT 61369891 Query 888 TGAATCTGGAGGAGC--GCAAACGGCTCGTCGCGCAGTTTCTGGCAGAATCCTCGCAGCG 945 ||| ||| |||| || | | ||| ||||| || | | || || || Sbjct 61369892 TGACCCTGAGTGAGCTAGCCA--GACTCCTCGCGGAG---CACGGAGCGTCA----AGAC 61369942 Query 946 CTCGCAGGAGGCGGCTTCGCAGCGTGAGTTCTCGGCTGACCCGGTCATCAAAAGCAAGAC 1005 | ||| | ||| | |||| ||| | | ||||||||||| | ||| Sbjct 61369943 C-CGCGTCTGCCGGTCT-GCAGTTTGAAAAC------GGTCCGGTCATCAAGACCAAACA 61369994 Query 1006 TTCCCAGAAATACATGGCGCTCGTCAACTGGCTCGTGGAGCACGGCATCACTTCCGAGAA 1065 || ||||| ||||||| ||| || || ||||| |||||| |||||||||| || ||||| Sbjct 61369995 GTCTCAGAACTACATGGAGCTGGTTAATTGGCTGGTGGAGAACGGCATCACGTCGGAGAA 61370054 Query 1066 GCAGTGGATCCAGGAAAATCAGGAGAGCTACCTCTCCTTCAACTCCACCGGCAACTCTCG 1125 ||||||||||||||| ||||| | ||||| || |||||| | || ||| || Sbjct 61370055 GCAGTGGATCCAGGAGAATCAAAATTCTTACCTGTCTTTCAACGCGACTTCCAATGAGCG 61370114 Query 1126 GAGC-CAGATCAAGGCCGCGCTCGACAACGCGACCAAAATTATGAGTCTGACAAAAAGCG 1184 ||| || || ||| | || || |||||| || | ||||||||| |||| ||| | Sbjct 61370115 -AGCACAAATTAAGTCAGCCCTGGACAACTCGTCAAAAATTATGTCATTGACCAAATCTG 61370173 Query 1185 CGGTGGACTACCTCGTGGGGAGCT---CCGTTCCCGAGGACATTTCAAAAAACAGAATCT 1241 | ||||| || ||||| ||| ||| || ||||| || | | |||||||| | Sbjct 61370174 CCCCTGACTATCTGGTGGG-AGCCGACCCG--CCGGAGGATCTTACCCAGAACAGAATTT 61370230 Query 1242 GGCAAATTTTTGAGATGAATGGCTACGACCCGGCCTACGCGGGATCCATCCTCTACGGCT 1301 || | ||| ||||||| || || || || || || || || || || |||| Sbjct 61370231 ATCAGCTGTTTCAGATGAACAATTATGATCCCGCTTATGCCGGTTCGATTCTGCTGGGCT 61370290 Query 1302 GGTGTCAGCGCTCCTTCAACAAGAGGAACACCGTCTGGCTCTACGGACCCGCCACGACCG 1361 ||||| || | || ||||||||| ||||| |||| ||||| | || |||||||| || | Sbjct 61370291 GGTGTGAGAGATCTTTCAACAAGCGGAACGCCGTTTGGCTATTTGGGCCCGCCACTACAG 61370350 Query 1362 GCAAGACCAACATCGCGGAGGCCATCGCCCACACTGTGCCCTTTTACGGCTGCGTGAACT 1421 | ||||||||| | || || |||||||| ||||| |||| || |||||||| || || | Sbjct 61370351 GAAAGACCAACCTGGCCGAAGCCATCGCTCACACCATGCCTTTCTACGGCTGTGTAAATT 61370410 Query 1422 GGACCAATGAAAACTTTCCCTTTAATGACTGTGTGGACAAAATGCTCATTTGGTGGGAGG 1481 |||||||||| ||||||||||| || |||| | || || |||||||| |||||||||| Sbjct 61370411 GGACCAATGAGAACTTTCCCTTCAACAACTGCTTCGATAAGATGCTCATCTGGTGGGAGG 61370470 Query 1482 AGGGAAAGATGACCAACAAGGTGGTTGAATCCGCCAAGGCCATCCTGGGGGGCTCAAAGG 1541 ||| |||||||| |||||| || || ||||||| |||||| | || || || |||| Sbjct 61370471 CGGGGAAGATGACGGCCAAGGTCGTGGAGCCCGCCAAAGCCATCTTCGGTGGATCCAAGG 61370530 Query 1542 TGCGGGTCGATCAGAAATGTAAATCCTCTGTTCAAATTGATTCTACCCCTGTCATTGTAA 1601 |||| || || ||||| || || || || || || |||| || ||||| | | Sbjct 61370531 TGCGCGTGGACCAGAAGTGCAAGGTTTCGCAGCAGATCGACGCTACGCCAGTCATCATCA 61370590 Query 1602 CTTCCAATACAAACATGTGTGTGGTGGTGGATGGGAATTCCACGACCTTTGAACACCAGC 1661 | || || | ||||||| ||||||||||||| ||||| || || ||||||||| | | Sbjct 61370591 CGTCGAACAGGGACATGTGCATGGTGGTGGATGGAAATTCTACCACTTTTGAACACAAAC 61370650 Query 1662 AGCCGCTGGAGGACCGCATGTTCAAATTTGAACTGACTAAGCGGCTCCCGCCAGATTTTG 1721 | || |||||||| | ||||||| |||| | | || | || || || |||| Sbjct 61370651 AACCTTTGGAGGACAGAATGTTCAGGTTTGTCTTTTCCAAAAGACTGGAACCTGACTTTG 61370710 Query 1722 GCAAGATTACTAAGCAGGAAGTCAAGGACTTTTTT 1756 | || |||||||||| ||| || || || |||||| Sbjct 61370711 GGAAAATTACTAAGCGGGAGGTGAAAGAATTTTTT 61370745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14742020751760