Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_006260.1 Length=4721 Score E Sequences producing significant alignments: (Bits) Value seq5 435 9e-119 >seq5 Length=100893473 Score = 435 bits (482), Expect = 9e-119 Identities = 541/741 (73%), Gaps = 0/741 (0%) Strand=Plus/Plus Query 1002 CTACATGGAGCTGGTCGGGTGGCTGGTGGACCGGGGCATCACCTCCGAGAAGCAGTGGAT 1061 ||||||||||||||| ||||||||||| |||||||| || |||||||||||||| Sbjct 61370004 CTACATGGAGCTGGTTAATTGGCTGGTGGAGAACGGCATCACGTCGGAGAAGCAGTGGAT 61370063 Query 1062 CCAGGAGGACCAGGCCTCGTACATCTCCTTCAACGCCGCCTCCAACTCGCGGTCCCAGAT 1121 ||||||| | || || ||| | || |||||||| | ||||| ||| | || || Sbjct 61370064 CCAGGAGAATCAAAATTCTTACCTGTCTTTCAACGCGACTTCCAATGAGCGAGCACAAAT 61370123 Query 1122 CAAGGCCGCGCTGGACAATGCCGGCAAGATCATGGCGCTGACCAAATCCGCGCCCGACTA 1181 ||| | || |||||||| | || || ||| | |||||||||| || || ||||| Sbjct 61370124 TAAGTCAGCCCTGGACAACTCGTCAAAAATTATGTCATTGACCAAATCTGCCCCTGACTA 61370183 Query 1182 CCTGGTGGGGCCCTCGCTGCCCGCGGACATTAAAACCAACCGCATCTACCGCATCCTGGA 1241 |||||||| || | ||| | ||| ||| ||| | || || | | | | Sbjct 61370184 TCTGGTGGGAGCCGACCCGCCGGAGGATCTTACCCAGAACAGAATTTATCAGCTGTTTCA 61370243 Query 1242 GCTGAACGGGTACGATCCTGCCTACGCCGGCTCCGTCTTTCTCGGCTGGGCCCAGAAAAA 1301 | ||||| || ||||| || || ||||| || | | || |||||| ||| | Sbjct 61370244 GATGAACAATTATGATCCCGCTTATGCCGGTTCGATTCTGCTGGGCTGGTGTGAGAGATC 61370303 Query 1302 GTTCGGGAAGCGCAACACCATCTGGCTGTTTGGGCCCGCCACCACCGGCAAGACCAACAT 1361 ||| ||||| ||| || | ||||| |||||||||||||| || || ||||||||| | Sbjct 61370304 TTTCAACAAGCGGAACGCCGTTTGGCTATTTGGGCCCGCCACTACAGGAAAGACCAACCT 61370363 Query 1362 TGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAA 1421 || ||||||||||| ||| || |||| ||||||||||| || || |||||||||||||| Sbjct 61370364 GGCCGAAGCCATCGCTCACACCATGCCTTTCTACGGCTGTGTAAATTGGACCAATGAGAA 61370423 Query 1422 CTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGAC 1481 ||||||||||||| | ||| |||| |||||| | ||||||||||||| ||| |||||||| Sbjct 61370424 CTTTCCCTTCAACAACTGCTTCGATAAGATGCTCATCTGGTGGGAGGCGGGGAAGATGAC 61370483 Query 1482 GGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGGACCA 1541 |||||||||||||||| ||||||| ||||| |||| || |||||||||||||||||| Sbjct 61370484 GGCCAAGGTCGTGGAGCCCGCCAAAGCCATCTTCGGTGGATCCAAGGTGCGCGTGGACCA 61370543 Query 1542 AAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAACACCAA 1601 ||||||||| || ||||||||| | || || || ||| |||| || |||| | Sbjct 61370544 GAAGTGCAAGGTTTCGCAGCAGATCGACGCTACGCCAGTCATCATCACGTCGAACAGGGA 61370603 Query 1602 CATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCCGTTGCAGGA 1661 ||||||| ||| | || || || ||||| || || ||| | || || ||| |||| Sbjct 61370604 CATGTGCATGGTGGTGGATGGAAATTCTACCACTTTTGAACACAAACAACCTTTGGAGGA 61370663 Query 1662 CCGGATGTTCAAATTTGAACTCACCCGCCGTCTGGAGCACGACTTTGGCAAGGTGACGAA 1721 | | ||||||| |||| | || | ||||| | |||||||| || | || || Sbjct 61370664 CAGAATGTTCAGGTTTGTCTTTTCCAAAAGACTGGAACCTGACTTTGGGAAAATTACTAA 61370723 Query 1722 GCAGGAAGTCAAAGAGTTCTT 1742 || ||| || ||||| || || Sbjct 61370724 GCGGGAGGTGAAAGAATTTTT 61370744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14994814248480