Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value seq5 417 2e-113 >seq5 Length=100893473 Score = 417 bits (462), Expect = 2e-113 Identities = 537/741 (72%), Gaps = 0/741 (0%) Strand=Plus/Plus Query 901 CTATATGGAGCTGGTCGGGTGGCTGGTGGACCGGGGCATCACCTCCGAGAAGCAGTGGAT 960 ||| ||||||||||| ||||||||||| |||||||| || |||||||||||||| Sbjct 61370004 CTACATGGAGCTGGTTAATTGGCTGGTGGAGAACGGCATCACGTCGGAGAAGCAGTGGAT 61370063 Query 961 CCAGGAGGACCAGGCCTCGTACATCTCCTTCAACGCCGCCTCCAACTCGCGGTCCCAGAT 1020 ||||||| | || || ||| | || |||||||| | ||||| ||| | || || Sbjct 61370064 CCAGGAGAATCAAAATTCTTACCTGTCTTTCAACGCGACTTCCAATGAGCGAGCACAAAT 61370123 Query 1021 CAAGGCCGCGCTGGACAATGCCGGCAAGATCATGGCGCTGACCAAATCCGCGCCCGACTA 1080 ||| | || |||||||| | || || ||| | |||||||||| || || ||||| Sbjct 61370124 TAAGTCAGCCCTGGACAACTCGTCAAAAATTATGTCATTGACCAAATCTGCCCCTGACTA 61370183 Query 1081 CCTGGTGGGGCCCTCGCTGCCCGCGGACATTACCCAGAACCGCATCTACCGCATCCTCGC 1140 |||||||| || | ||| | ||| ||||||||||| | || || | | | Sbjct 61370184 TCTGGTGGGAGCCGACCCGCCGGAGGATCTTACCCAGAACAGAATTTATCAGCTGTTTCA 61370243 Query 1141 TCTCAACGGCTACGACCCTGCCTACGCCGGCTCCGTCTTTCTCGGCTGGGCTCAGAAAAA 1200 | ||| || || || || || ||||| || | | || |||||| | ||| | Sbjct 61370244 GATGAACAATTATGATCCCGCTTATGCCGGTTCGATTCTGCTGGGCTGGTGTGAGAGATC 61370303 Query 1201 GTTCGGGAAACGCAACACCATCTGGCTGTTTGGACCCGCCACCACCGGCAAGACCAACAT 1260 ||| || || ||| || | ||||| ||||| |||||||| || || ||||||||| | Sbjct 61370304 TTTCAACAAGCGGAACGCCGTTTGGCTATTTGGGCCCGCCACTACAGGAAAGACCAACCT 61370363 Query 1261 TGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAA 1320 || ||||||||||| ||| || |||| ||||||||||| || || |||||||||||||| Sbjct 61370364 GGCCGAAGCCATCGCTCACACCATGCCTTTCTACGGCTGTGTAAATTGGACCAATGAGAA 61370423 Query 1321 CTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGAC 1380 |||||||||||| | ||| |||| |||||| | ||||||||||||| ||| |||||||| Sbjct 61370424 CTTTCCCTTCAACAACTGCTTCGATAAGATGCTCATCTGGTGGGAGGCGGGGAAGATGAC 61370483 Query 1381 GGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGGACCA 1440 |||||||||||||||| ||||||| ||||| |||| || |||||||||||||||||| Sbjct 61370484 GGCCAAGGTCGTGGAGCCCGCCAAAGCCATCTTCGGTGGATCCAAGGTGCGCGTGGACCA 61370543 Query 1441 AAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAACACCAA 1500 ||||||||| || ||||||||| | || || || ||| |||| || |||| | Sbjct 61370544 GAAGTGCAAGGTTTCGCAGCAGATCGACGCTACGCCAGTCATCATCACGTCGAACAGGGA 61370603 Query 1501 CATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCCTCTCCAGGA 1560 ||||||| ||| | || || || ||||| || || ||| | || ||| | |||| Sbjct 61370604 CATGTGCATGGTGGTGGATGGAAATTCTACCACTTTTGAACACAAACAACCTTTGGAGGA 61370663 Query 1561 CCGGATGTTTAAGTTCGAACTCACCCGCCGTCTGGAGCACGACTTTGGCAAGGTGACAAA 1620 | | ||||| | ||| | | || | ||||| | |||||||| || | || || Sbjct 61370664 CAGAATGTTCAGGTTTGTCTTTTCCAAAAGACTGGAACCTGACTTTGGGAAAATTACTAA 61370723 Query 1621 GCAGGAAGTCAAAGAGTTCTT 1641 || ||| || ||||| || || Sbjct 61370724 GCGGGAGGTGAAAGAATTTTT 61370744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13945241249440