Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_014468.1 Length=4286 Score E Sequences producing significant alignments: (Bits) Value seq5 379 6e-102 >seq5 Length=100893473 Score = 379 bits (420), Expect = 6e-102 Identities = 671/975 (69%), Gaps = 14/975 (1%) Strand=Plus/Plus Query 639 AGGGCTTTATCCCCGCCTACCTGCTGCCGAAGCGCCAATCGGAGCTGCAGTGGGCGTGGA 698 || ||| ||||||||||||| |||| || ||| ||||| | || ||||||||||||||| Sbjct 61369802 AGAGCTATATCCCCGCCTACTTGCTTCCAAAGAGCCAACCAGAATTGCAGTGGGCGTGGA 61369861 Query 699 CGAACATAGAAAAGTACGAGCGCGCCACGCTGAGCGTCGCAGAGCGCGCCAGACTCGTCG 758 | ||||| ||| ||| | || ||| ||| | | |||| ||||||||| ||| Sbjct 61369862 CTAACATCGAAGGGTATAAAAAAGCGACGTTGACCCTGAGTGAGCTAGCCAGACTCCTCG 61369921 Query 759 AGGAGTGGAAGCGGAGCCTC--GCCGCCGAGGAATCTGACCCCGCGGAACCCGAACGCCG 816 |||| |||||| || | | ||| | |||| | | | ||| | | Sbjct 61369922 CGGAGCA----CGGAGCGTCAAGAC-CCGCG---TCTGCCGGTCTGCAGTTTGAAAACGG 61369973 Query 817 TCCGCGAAAGTCGACCAAATCCGCGTCAGAA-TACATGGCGCTCGTCAGGTGGCTCGTGG 875 |||| | ||||||| | | |||||| ||||||| ||| || | ||||| |||| Sbjct 61369974 TCCGGTCATCAAGACCAAA-CAGTCTCAGAACTACATGGAGCTGGTTAATTGGCTGGTGG 61370032 Query 876 ACAACGGCATCGCGACCGAGCGCGAGTGGATGCGCGAGGACTCGGACGGGTACCTGAGCT 935 | ||||||||| || | ||| ||||||| | ||| | | |||||| | Sbjct 61370033 AGAACGGCATCACGTCGGAGAAGCAGTGGATCCAGGAGAATCAAAATTCTTACCTGTCTT 61370092 Query 936 ACAACGCCACGGGCGCCACGCGCGCCCAGATCAAGGCCGCGCTCGACAACGCGGCCCGCA 995 |||||| || | ||| || || || ||| | || || |||||| || | | Sbjct 61370093 TCAACGCGACTTCCAATGAGCGAGCACAAATTAAGTCAGCCCTGGACAACTCGTCAAAAA 61370152 Query 996 TCATGGTCAAC-ACGAAGACGGCCGCCGACTACCTGGTCGGCAGGAACCCGCCCCTCGAC 1054 | ||| ||| || || | ||| | ||||| ||||| || ||||||| || Sbjct 61370153 TTATG-TCATTGACCAAATCTGCCCCTGACTATCTGGTGGGAGCCGACCCGCCGGAGGAT 61370211 Query 1055 GTGGAGGACAACAGGATCTACCGGCTGTTTCGCATGAACGGCTACGACCCCGCCTACGCG 1114 | | ||||| || || | |||||||| |||||| || || ||||| || || Sbjct 61370212 CTTACCCAGAACAGAATTTATCAGCTGTTTCAGATGAACAATTATGATCCCGCTTATGCC 61370271 Query 1115 GGCAGCGTGCTGCTCGGCTGGTGCCGCACCGGCTTCGGCAAGCGCAACACCGTCTGGCTC 1174 || | ||||| |||||||| | ||| |||||| ||| |||| ||||| Sbjct 61370272 GGTTCGATTCTGCTGGGCTGGTGTGAGAGATCTTTCAACAAGCGGAACGCCGTTTGGCTA 61370331 Query 1175 TTCGGGCCGGCCACGACCGGCAAGACGAACCTCGCCGAGGCCATCAGCCACTCGGTGCCC 1234 || ||||| ||||| || || ||||| ||||| ||||| |||||| ||| | |||| Sbjct 61370332 TTTGGGCCCGCCACTACAGGAAAGACCAACCTGGCCGAAGCCATCGCTCACACCATGCCT 61370391 Query 1235 TTCTACGGCTGCGTCAACTGGACCAACGAGAACTTCCCCTTCAACGACTGCGTGGACAAG 1294 ||||||||||| || || |||||||| |||||||| ||||||||| ||||| | || ||| Sbjct 61370392 TTCTACGGCTGTGTAAATTGGACCAATGAGAACTTTCCCTTCAACAACTGCTTCGATAAG 61370451 Query 1295 ATGATCATCTGGTGGGAGGAGGGCAAGATGACGTCCAAGGTCGTCGAGAGCGCCAAGGCC 1354 ||| ||||||||||||||| ||| ||||||||| |||||||||| ||| |||||| ||| Sbjct 61370452 ATGCTCATCTGGTGGGAGGCGGGGAAGATGACGGCCAAGGTCGTGGAGCCCGCCAAAGCC 61370511 Query 1355 ATCCTCGGCGGCAGCAAGGTGCGCGTCGACCAGAAGTGCAAGAACTCGCAGCAGATCGAG 1414 ||| |||| || |||||||||||| ||||||||||||||| |||||||||||||| Sbjct 61370512 ATCTTCGGTGGATCCAAGGTGCGCGTGGACCAGAAGTGCAAGGTTTCGCAGCAGATCGAC 61370571 Query 1415 CCCACGCCCGTCATNNNNNNNNNNNNNNNNNACATGTGCGAGGTCGTCGACGGGAACTCG 1474 | ||||| ||||| |||||||| ||| || || || || || Sbjct 61370572 GCTACGCCAGTCATCATCACGTCGAACAGGGACATGTGCATGGTGGTGGATGGAAATTCT 61370631 Query 1475 ACCACGTTCGAGCACCGGCAGCCGCTCGAGGACAGGATGTTCAAGTTCGAGCTCACCGTC 1534 ||||| || || ||| || || | |||||||| ||||||| ||| | | || Sbjct 61370632 ACCACTTTTGAACACAAACAACCTTTGGAGGACAGAATGTTCAGGTTTGTCTTTTCCAAA 61370691 Query 1535 AGGCTGCAGCCCACCTTCGGCAAGATCACCAAGCAGGAGGTGCGCGAGTTCTTTAAGTGG 1594 || ||| | || ||| || || || || |||| ||||||| || || ||||||||| Sbjct 61370692 AGACTGGAACCTGACTTTGGGAAAATTACTAAGCGGGAGGTGAAAGAATTTTTTAAGTGG 61370751 Query 1595 GCGGAGCTCAACGCC 1609 | |||||| ||| || Sbjct 61370752 GTGGAGCTTAACCCC 61370766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13602850057680