Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_001401.2 Length=4679 Score E Sequences producing significant alignments: (Bits) Value seq268 320 5e-84 >seq268 Length=5072910 Score = 320 bits (354), Expect = 5e-84 Identities = 506/716 (71%), Gaps = 17/716 (2%) Strand=Plus/Plus Query 2781 AGCCCCCTCTGGTCTGGGAACTAATACGATGGCTACAGGCAGTGGCGCACCAATGGCAGA 2840 || |||||| | | ||| |||| | |||||| |||| || | |||||||||| || Sbjct 4836819 AGGCCCCTCATATTTAGGATCTAAACCAATGGCTTCAGGTGGTAGGGCACCAATGGGTGA 4836878 Query 2841 CAATAACGAGGGCGCCGACGGAGTGGGTAATTCCTCGGGAAATTGGCATTGCGATTCCAC 2900 | ||| |||| ||||| | | | |||||||| || |||||||||||||| |||||| Sbjct 4836879 AGACAACCAGGGTGCCGATGAATTAGGTAATTCTTCAGGAAATTGGCATTGTGATTCCCA 4836938 Query 2901 ATGGATGGGCGACAGAGTCATCACCACCAGCACCCGAACCTGGGCCCTGCCCACCTACAA 2960 ||| |||| || || ||||||||| ||||| ||| ||| |||||||||||||| Sbjct 4836939 ATGACTGGGAAACTGAATCATCACCAAGTCCACCCAGGCCT-GGCTCTGCCCACCTACAA 4836997 Query 2961 CAACCACCTCTACAAACAAATTTCCAGCCAATCAGGAGCCTCGAACGACAATCACTACTT 3020 ||||||||||||| |||||||| | | || | ||| | || ||||| | ||||| Sbjct 4836998 CAACCACCTCTACTAACAAATTAC--TCAAACCTCTAGCAAC-AATGACAAAGAGTACTT 4837054 Query 3021 TGGCTACAGCACCCCTTGGGGGTATTTTGACTTCAACAGATTCCACTGCCACTTTTCACC 3080 ||| ||||||||||| ||| || |||||||| || | |||||||| ||||| || || Sbjct 4837055 TGGATACAGCACCCC-CGGGAATACTTTGACTTTAATCGCTTCCACTGACACTTCTCTCC 4837113 Query 3081 ACGTGACTGGCAAAGACTCATCAACAACAACTGGGGATTCCGACCCAAGAGACTCAACTT 3140 | |||||||| ||| ||||||||||||| ||| ||| ||||||| | || ||||| Sbjct 4837114 TTGAGACTGGCAGCGACCCATCAACAACAACAGGGACTTCTGACCCAAAAAACAAAACTT 4837173 Query 3141 CAAGCTCTTTAACATTCAAGTCAAAGAGGTCACGCAGAATGACGGTACGACGACGATTGC 3200 |||||| |||||||||||||||||||||| | | ||| | || | ||| || || Sbjct 4837174 TAAGCTC---AACATTCAAGTCAAAGAGGTCATGACCCAAGACAGCACCATGACCATCGC 4837230 Query 3201 CAATAACCTTACCAGCACGGTTCAGGTGTTTACTGACTCGGAGTACCAGCTCCCGTACGT 3260 ||||||||| || ||| | ||||||||| ||||| || || ||| | ||| | Sbjct 4837231 CAATAACCTCACTTCCACCATCCAGGTGTTTGTGGACTCAGACTATCAGTTAGTATAC-T 4837289 Query 3261 CCTCGGCTCG-GCGCATCAAGGATGCCTCCCGCCGTTCCCAGCAGACGTCTTCATGGTGC 3319 | ||| | | || | || || ||| ||| || | | || || || ||||| | Sbjct 4837290 TAGCTGCTAGTACCCACAAGGGCTGTCTCTAGCCTTTTCTGGATGAAGTTTTTATGGTAC 4837349 Query 3320 CACAGTATGGATACCTCACCCTGAACAACGGGAGTCAGGCAGTAGGACG------CTCTT 3373 | || ||||| || || || || || | || | || ||| | | | | || || Sbjct 4837350 CTCAATATGGCTATCTGACTCTCAATGATGGCAACCAAGCACTGGAATGAGCTTCCTTTT 4837409 Query 3374 CATTTTACTGCCTGGAGTACTTTCCTTCTCAGATGCTGCGTACCGGAAACAACTTTACCT 3433 | ||| | | | |||| || || | ||||||||||| ||| | | ||||||||||| Sbjct 4837410 CCTTTCATTACTTGGAATATTTCTCCAGTCAGATGCTGCAAACCAGCAGCAACTTTACCT 4837469 Query 3434 TCAGCTACACTTTTGAGGACGTTCCTTTCCACAGCAGCTA-CGCTCACAGCCAGAG 3488 || |||| |||||| || | ||||||||| || || || |||||||| Sbjct 4837470 TCTCATACATGTTTGAGAGTGTGCTCTTCCACAGCTCATATTGCCCATAGCCAGAG 4837525 Score = 187 bits (206), Expect = 7e-44 Identities = 385/557 (69%), Gaps = 18/557 (3%) Strand=Plus/Plus Query 2078 GTATCAGAAACTGTGCTACATTCATCATATCATGGGAAAGGTGCCAGACGCTTGCACTGC 2137 ||| || ||| |||||| ||| ||| | || | ||| | ||| | ||||| |||| Sbjct 4836136 GTACCAAAAATTGTGCTCTATTTGTCACTTAATAGTAAAAATCCCACAGGCTTGTTCTGC 4836195 Query 2138 CTGCGATCTGGTCAATGTGGATTTGGATGAC-TGCATCTTTGAACAATAAA-TGATTTAA 2195 || || || | ||| |||| |||| || ||| |||||||||| | |||||| Sbjct 4836196 CTA--ATTTGTTAAATTATTGTTTGAATGATATGGATCAA-GAACAATAAAATTATTTAA 4836252 Query 2196 ATCAGGTATGGCTGCCGATGGTTATCTTCCAGATTGGCTCGAGGACACTCTCTCTGA-AG 2254 || || ||||||| |||||||| ||||| | ||| | || | ||||||| | || Sbjct 4836253 AT-AGACATGGCTG---ATGGTTATTTTCCAAACTGGTTGGAAATTATTCTCTCTTACAG 4836308 Query 2255 GAA-TAAGACAGTGGTGGAAGCTCAAACCTGGCCCACCACCACCAAAGCCCGCAGAGCGG 2313 | ||||| |||| || | || |||||| ||| ||| ||| || ||| | Sbjct 4836309 GTTCTAAGA--GTGGCAAAACTTAAAGTCTGGCCTGCCAAAACCTAAGGCCAATCAGCAG 4836366 Query 2314 CATAAGGACGACAGCAGGGGTCTTGTGCTTCCTGGGTACAAGTACCTCGGACCCTTCAAC 2373 ||| | ||| | | ||||||||| | | ||||| || || ||| | || | |||| Sbjct 4836367 CATCAAGACTTCTCATGTGGTCTTGTGTTGTCCGGGTATAAATATCTCTGGCCATGCAAC 4836426 Query 2374 GGACTCGACAAGGGAGAGCCGGTCAACGAGGCAGACGCCGCGGCCCTCGAGCACGACAAA 2433 | || ||||| |||||||| ||||| |||||| | || || || |||||| ||| Sbjct 4836427 AGTCTTGACAAAGGAGAGCCCATCAACAAGGCAGTCT--GCTGCTCTTGAGCACAGCAAG 4836484 Query 2434 GCCTACGACCGGCAGCTCGACAGCGGAGACAACCCGTACCTCAAGTACAACCACGCCGAC 2493 |||||| || |||||| | |||| |||| | ||| ||| |||||||||| || Sbjct 4836485 GCCTACAACAAGCAGCTTAAG-GCGGGTACAATTCATACTTCAGGTACAACCACAAGAAC 4836543 Query 2494 GCGGAGTTTCAGGAGCGCCTTAAAGAAGATACGTCTTTTGGGGGCAACCTCGGACGAGCA 2553 | ||| |||||||| || || | |||| |||||||||||||| ||| ||| Sbjct 4836544 ACTGAGCTTCAGGAGAAGCTCAACTAC-ATACTTCTTTTGGGGGCAAACTCAACAAAGCT 4836602 Query 2554 GTCTTCCAGGCGAAAAAGAGGGTTCTTGAACCTCTGGGCCTGGTTGAGGAACCTGTTAAG 2613 || |||||||| |||||| ||||||| || | | ||||||||| | || |||||||| Sbjct 4836603 GTATTCCAGGCTGAAAAGAAAGTTCTTGCACAT-TTGGCCTGGTTTAACAAGCTGTTAAG 4836661 Query 2614 ACGGCTCCGGGAAAAAA 2630 |||| ||| || || || Sbjct 4836662 ACGGTTCCTGGCAAGAA 4836678 Score = 134 bits (148), Expect = 4e-28 Identities = 185/259 (71%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 4010 GCATGGTCTGGCAGGACAGAGATGTGTACCTTCAGGGGCCCATCTGGGCAAAGATTCCAC 4069 ||||||| ||| |||| ||||| || || || ||| | |||||| ||| ||||| || | Sbjct 4838027 GCATGGTGTGGAAGGAGAGAGACGTTTATCTGCAGAGTCCCATCCAGGCCAAGATACCCC 4838086 Query 4070 ACACGGACGGACATTTTCACCCCTCTCCCCTCATGGGTGGATTCGGACTTAAACACCCTC 4129 |||| | ||||| || ||| | ||||| ||||| | | || ||| | ||||| |||| Sbjct 4838087 ACACAAATGGACACTTCCACTCATCTCCTTTCATGAGAGACTTTGGAGTAAAACAACCTC 4838146 Query 4130 CTCCACAGATTCTCATCAAGAACACCCCGGTACCTGCGAATCCTTCGACCACCTTCAGTG 4189 ||||||||||||| | || || || | | ||| | ||| | |||||||| ||| Sbjct 4838147 CTCCACAGATTCTGGTTAAAAATACATCAGCTTCTGGCAGTCCAACAACCACCTTTAGTC 4838206 Query 4190 CGGCAAAGTTTGCTTCCTTCATCACACAGTACTCCACGGGACAGGTCAGCGTGGAGATCG 4249 | | || ||||| || || || || ||||||||| | |||||| | |||||||| Sbjct 4838207 CTGACAAATTTGCCTCTTTTATAACCCAGTACTCCGCCAATCAGGTCGGAGTGGAGATTC 4838266 Query 4250 AGTGGGAGCTGCAGAAGGA 4268 || || ||||| || || Sbjct 4838267 CATGAGAACTGCAAAAAGA 4838285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14857141387140