Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_001510.1 Length=5149 Score E Sequences producing significant alignments: (Bits) Value seq73 105 2e-19 seq132 96.9 1e-16 >seq73 Length=12356756 Score = 105 bits (116), Expect = 2e-19 Identities = 110/144 (76%), Gaps = 3/144 (2%) Strand=Plus/Minus Query 1417 ACAGACAAGGAGGCAAAAGAAATACTGTTTTATTTCATGGACCAGCCAGCACAGGCAAAT 1476 ||| |||||| | |||||| || | |||| |||||||||| || || ||||| |||| Sbjct 9408868 ACACACAAGGGG---AAAGAAGTATTATTTTGTTTCATGGACAAGAAAGTACAGGAAAAT 9408812 Query 1477 CTATTATTGCACAAGCCATAGCACAAGCAGTTGGCAATGTTGGTTGCTATAATGCAGCCA 1536 || | || | ||| || |||||| |||| |||| ||||| ||||||||||| | Sbjct 9408811 CTCTCATAGAACATAAAATTGCACAATTTATTGGTAATGCTGGTTACTATAATGCAGGAA 9408752 Query 1537 ATGTAAACTTTCCATTTAATGACT 1560 || | ||||||||||||||||||| Sbjct 9408751 ATATGAACTTTCCATTTAATGACT 9408728 >seq132 Length=8627105 Score = 96.9 bits (106), Expect = 1e-16 Identities = 136/190 (72%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 1584 GTAGAAGAAGCTGGTAACTTTGGACAGCAAGT-AAACCAGTTTAAAGCCATTTGCTCTGG 1642 |||||||||||||| | ||||||||| | | ||| || |||||| ||| |||| Sbjct 918411 GTAGAAGAAGCTGGACATTTTGGACAGTGACTTAAAGCAATTTAAACAGATTACATCTGA 918352 Query 1643 TCAAACTATTCGCATTGATCAAAAAGGAAAAGGCAGCAAACAGATTGAACCAACACCAGT 1702 ||||| | | |||||||||||||| ||||| || ||| |||||| ||| ||||| Sbjct 918351 ACAAACATTGAGAATTGATCAAAAAGGTAAAGGAAGTAAAACTATTGAATCAATTCCAGT 918292 Query 1703 CATCATGACCACAAATGAGAACATTACAGTGGTCAGAATAGGCTGCGAAGAAAGACCAGA 1762 || ||||| || || || | || |||| | | | | || || ||| |||||| || Sbjct 918291 AATGATGACAACTAAAGAAGATATAACAGCAATTAAAGTTGGATGTGAAATAAGACCTGA 918232 Query 1763 ACACACTCAA 1772 ||| | |||| Sbjct 918231 ACATAATCAA 918222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16360771114090