Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_001539.1 Length=5323 Score E Sequences producing significant alignments: (Bits) Value seq132 158 4e-35 seq73 134 5e-28 >seq132 Length=8627105 Score = 158 bits (174), Expect = 4e-35 Identities = 145/182 (80%), Gaps = 1/182 (1%) Strand=Plus/Minus Query 1601 GAAGAAGCTGGTAACTTTGGTCAACAAGTTAAT-CAATTTAAAGCAATTTGTTCTGGACA 1659 ||||||||||| | ||||| || | |||| ||||||||| ||| |||| ||| Sbjct 918408 GAAGAAGCTGGACATTTTGGACAGTGACTTAAAGCAATTTAAACAGATTACATCTGAACA 918349 Query 1660 AACAATTAGAATTGATCAAAAAGGTAAAGGAAGTAAGCAAATTGAACCAACTCCAGTAAT 1719 |||| | ||||||||||||||||||||||||||||| |||||| ||| ||||||||| Sbjct 918348 AACATTGAGAATTGATCAAAAAGGTAAAGGAAGTAAAACTATTGAATCAATTCCAGTAAT 918289 Query 1720 TATGACAACTAATGAAAATATAACAATTGTGAGAATTGGATGTGAAGAAAGACCTGAACA 1779 ||||||||||| ||| |||||||| | | | ||||||||||| |||||||||||| Sbjct 918288 GATGACAACTAAAGAAGATATAACAGCAATTAAAGTTGGATGTGAAATAAGACCTGAACA 918229 Query 1780 TA 1781 || Sbjct 918228 TA 918227 >seq73 Length=12356756 Score = 134 bits (148), Expect = 5e-28 Identities = 169/228 (74%), Gaps = 12/228 (5%) Strand=Plus/Minus Query 1577 ACCAATAAAAATTTAATTTGGATTGAAGAAGCTGGTAACTTTGGTCAACAAGTTAATCAA 1636 || || ||||| |||||||| ||||| |||| | || ||||||| ||||| | ||| Sbjct 9408569 ACAAACAAAAACCTAATTTGGGTTGAA-AAGCAAGAAATTTTGGTCTGCAAGTAAGTCAG 9408511 Query 1637 TTTAAAGCAATTTGTTCTGGACAAACAATTAGAATTGATCAAAAAGGTAAAGGAAGTAAG 1696 ||||| | |||| ||||| ||| || ||||| | |||| | |||||| ||| Sbjct 9408510 TTTAAGGAAATTATATCTGGGCAAGCA----GAATTATCCCAAAAAGAAAAGGATCTAAA 9408455 Query 1697 CAAATTGAACCAACTCCAGTAATTATGACAACTAATGAAAATATAAC---AATTGTGAGA 1753 |||||| |||||||| ||||| ||||||||||||||||| ||| |||| ||| Sbjct 9408454 ACAATTGAGCCAACTCCTGTAATGATGACAACTAATGAAAACGAAACTGAAATT---AGA 9408398 Query 1754 ATTGGATGTGAAGAAAGACCTGAACATACACAACCAATAAGAGACAGA 1801 | |||||||||| ||||| || || |||||| |||| ||||| ||| Sbjct 9408397 AATGGATGTGAACTGAGACCAGACCACACACAA-CAATCAGAGATAGA 9408351 Score = 107 bits (118), Expect = 6e-20 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 1446 AAAGAAATACAGTTCTTTTTCATGGACCAGCAAGTACAGGAAAATCTATCATTGCTCAAG 1505 |||||| || || | |||||||||| || |||||||||||||||| |||| | || Sbjct 9408856 AAAGAAGTATTATTTTGTTTCATGGACAAGAAAGTACAGGAAAATCTCTCATAGAACATA 9408797 Query 1506 CCATAGCACAAGCTGTGGGTAATGTTGGTTGTTATAATGCAGCAAATGTAAATTTTCCAT 1565 || |||||| | | ||||||| ||||| |||||||||| |||| | || ||||||| Sbjct 9408796 AAATTGCACAATTTATTGGTAATGCTGGTTACTATAATGCAGGAAATATGAACTTTCCAT 9408737 Query 1566 TTAATGACT 1574 ||||||||| Sbjct 9408736 TTAATGACT 9408728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16917434034280