Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_001701.1 Length=5106 Score E Sequences producing significant alignments: (Bits) Value seq268 223 1e-54 >seq268 Length=5072910 Score = 223 bits (246), Expect = 1e-54 Identities = 288/387 (74%), Gaps = 18/387 (5%) Strand=Plus/Plus Query 3074 GGGTGCCGATGGAGTGGGTAATGCCTCGGGAAATTGGCATTGCGATTCCCAATGGATGGG 3133 ||||||||||| | | |||||| | || |||||||||||||| ||||||||||| |||| Sbjct 4836888 GGGTGCCGATGAATTAGGTAATTCTTCAGGAAATTGGCATTGTGATTCCCAATGACTGGG 4836947 Query 3134 AAACACAGTCATCACAAAGACCACCAGAACCTGGGTCCTGCCAAGCTACAACAACCACAT 3193 |||| | ||||||| ||| ||||| ||||| | ||||| | ||||||||||||| | Sbjct 4836948 AAACTGAATCATCACCAAGTCCACCCAGGCCTGGCT-CTGCCCACCTACAACAACCACCT 4837006 Query 3194 CTACAAAGCAATTAC-CAGCGGAACCTCT--CAA-GATGCAAATGTCCAGTATGCAGGAT 3249 |||| || |||||| || ||||||| ||| ||| || | |||| |||| Sbjct 4837007 CTACTAACAAATTACTCA----AACCTCTAGCAACAATGACAAAG---AGTACTTTGGAT 4837059 Query 3250 ACAGTACCCCCTGGGGGTACTTTGATTTCAACCGCTTCCACTGCCACTTCTCCCCTAGAG 3309 |||| |||||| ||| |||||||| || || ||||||||||| |||||||| ||| ||| Sbjct 4837060 ACAGCACCCCC-GGGAATACTTTGACTTTAATCGCTTCCACTGACACTTCTCTCCTTGAG 4837118 Query 3310 ACTGGCAGAGACTTATCAACAACCATTGGGGAATCAGACCCAAGTCTCTTAAATTCAAGA 3369 |||||||| ||| ||||||||| | ||| || ||||||| | || || ||| Sbjct 4837119 ACTGGCAGCGACCCATCAACAACAACAGGGACTTCTGACCCAAAAAACAAAACTTTAAG- 4837177 Query 3370 TCTTCAATGTCCAAGTCAAAGAAGTCACAACGCAGGATCAG-ACAAAGACCATTGCAAAC 3428 |||| | ||||||||||| |||| || || || ||| || | |||||| || || Sbjct 4837178 --CTCAACATTCAAGTCAAAGAGGTCATGACCCAAGA-CAGCACCATGACCATCGCCAAT 4837234 Query 3429 AATCTCACCTCAACAATTCAAGTCTTT 3455 || ||||| || || || || || ||| Sbjct 4837235 AACCTCACTTCCACCATCCAGGTGTTT 4837261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16223204990135