Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_001718.1 Length=5075 Score E Sequences producing significant alignments: (Bits) Value seq73 118 3e-23 seq132 102 3e-18 >seq73 Length=12356756 Score = 118 bits (130), Expect = 3e-23 Identities = 163/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 1591 ACAAATAAAAACTTAATATGGATTGAAGAAGCAGGAAACTTCTCTAACCAAGTAAACCAA 1650 ||||| |||||| |||| ||| ||||| ||||| |||| || | ||||||| || Sbjct 9408569 ACAAACAAAAACCTAATTTGGGTTGAA-AAGCAAGAAATTTTGGTCTGCAAGTAAGTCAG 9408511 Query 1651 TTCAAAGCCATATGTTCAGGTCAAACAATTAGAATTGACCAAAAAGGTAAAGGAAGCAAA 1710 || || | || || || ||| || ||||| || |||| | |||||| ||| Sbjct 9408510 TTTAAGGAAATTATATCTGGGCAAGCA----GAATTATCCCAAAAAGAAAAGGATCTAAA 9408455 Query 1711 CAAATTGAACCAACTCCTGTAATAATGACTACAAATGAAGACATAACTAAAGTTAGAATA 1770 |||||| |||||||||||||| ||||| || |||||| || |||| || |||||| Sbjct 9408454 ACAATTGAGCCAACTCCTGTAATGATGACAACTAATGAAAACGAAACTGAAATTAGAAAT 9408395 Query 1771 GGATGCGAGGAAAGACCAGAACATACACAACCAATAAGAGACAGA 1815 ||||| || |||||||| || |||||| |||| ||||| ||| Sbjct 9408394 GGATGTGAACTGAGACCAGACCACACACAA-CAATCAGAGATAGA 9408351 Score = 96.9 bits (106), Expect = 1e-16 Identities = 108/144 (75%), Gaps = 3/144 (2%) Strand=Plus/Minus Query 1445 ACAGACAAGGAGGAAAAAGAAATACAATTCTATTTCATGGGCCAGCATCAACAGGAAAAA 1504 ||| |||||| | |||||| || ||| | |||||||| | || | ||||||||| Sbjct 9408868 ACACACAAGGGG---AAAGAAGTATTATTTTGTTTCATGGACAAGAAAGTACAGGAAAAT 9408812 Query 1505 GTATAATTGCTCAACACATTGCAAACTTAGTTGGTAATGTTGGTTGCTACAATGCAGCCA 1564 | | || | || | |||||| | || ||||||||| ||||| ||| ||||||| | Sbjct 9408811 CTCTCATAGAACATAAAATTGCACAATTTATTGGTAATGCTGGTTACTATAATGCAGGAA 9408752 Query 1565 ATGTGAACTTTCCATTTAATGACT 1588 || ||||||||||||||||||||| Sbjct 9408751 ATATGAACTTTCCATTTAATGACT 9408728 >seq132 Length=8627105 Score = 102 bits (112), Expect = 3e-18 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 1672 CAAACAATTAGAATTGACCAAAAAGGTAAAGGAAGCAAACAAATTGAACCAACTCCTGTA 1731 |||||| | |||||||| ||||||||||||||||| ||| |||||| ||| ||| ||| Sbjct 918350 CAAACATTGAGAATTGATCAAAAAGGTAAAGGAAGTAAAACTATTGAATCAATTCCAGTA 918291 Query 1732 ATAATGACTACAAATGAAGACATAACTAAAGTTAGAATAGGATGCGAGGAAAGACCAGAA 1791 || ||||| || || ||||| ||||| | ||| | | ||||| || |||||| ||| Sbjct 918290 ATGATGACAACTAAAGAAGATATAACAGCAATTAAAGTTGGATGTGAAATAAGACCTGAA 918231 Query 1792 CATA 1795 |||| Sbjct 918230 CATA 918227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16124029412400