Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_001729.1 Length=4726 Score E Sequences producing significant alignments: (Bits) Value seq268 345 1e-91 >seq268 Length=5072910 Score = 345 bits (382), Expect = 1e-91 Identities = 545/770 (71%), Gaps = 23/770 (3%) Strand=Plus/Plus Query 2787 AGCCCCCACAAGTTTGGGATCTAATACAATGGCTTCAGGCGGTGGCGCACCAATGGCAGA 2846 || |||| || ||| |||||||| ||||||||||||| ||| | |||||||||| || Sbjct 4836819 AGGCCCCTCATATTTAGGATCTAAACCAATGGCTTCAGGTGGTAGGGCACCAATGGGTGA 4836878 Query 2847 CAATAACGAGGGTGCCGATGGAGTGGGTAATTCCTCAGGAAATTGGCATTGCGATTCCCA 2906 | ||| |||||||||||| | | |||||||| ||||||||||||||||| |||||||| Sbjct 4836879 AGACAACCAGGGTGCCGATGAATTAGGTAATTCTTCAGGAAATTGGCATTGTGATTCCCA 4836938 Query 2907 ATGGCTGGGCGACAGAGTCATCACCACCAGCACCAGAACCTGGGCCCTGCCCACTTACAA 2966 ||| ||||| || || ||||||||| |||| ||| ||| |||||||| ||||| Sbjct 4836939 ATGACTGGGAAACTGAATCATCACCAAGTCCACCCAGGCCT-GGCTCTGCCCACCTACAA 4836997 Query 2967 CAACCATCTCTACAAGCAAAT--CTCCAGCCAATCAGGAGCTTCAAACGACAACCACTAC 3024 |||||| |||||| | ||||| ||| | || | || | | || ||||| | ||| Sbjct 4836998 CAACCACCTCTACTAACAAATTACTCAAACCTCT-AGCAAC----AATGACAAAGAGTAC 4837052 Query 3025 TTTGGCTACAGCACCCCTTGGGGGTATTTTGACTTTAACAGATTCCACTGCCACTTCTCA 3084 ||||| ||||||||||| ||| || ||||||||||| | |||||||| |||||||| Sbjct 4837053 TTTGGATACAGCACCCC-CGGGAATACTTTGACTTTAATCGCTTCCACTGACACTTCTCT 4837111 Query 3085 CCACGTGACTGGCAGCGACTCATTAACAACAACTGGGGATTCCGGCCCAAGAAACTCAGC 3144 || | ||||||||||||| ||| ||||||||| ||| ||| | ||||| |||| | | Sbjct 4837112 CCTTGAGACTGGCAGCGACCCATCAACAACAACAGGGACTTCTGACCCAAAAAACAAAAC 4837171 Query 3145 TTCAAGCTCTTCAACATCCAAGTTAGAGGGGTCACGCAGAACGATGGCACGACGACTATT 3204 || |||| ||||||| ||||| | || ||||| | | || |||| | ||| || Sbjct 4837172 TTTAAGC---TCAACATTCAAGTCAAAGAGGTCATGACCCAAGACAGCACCATGACCATC 4837228 Query 3205 GCCAATAACCTTACCAGCACGGTTCAAGTGTTTACGGACTCGGAGTATCAGCTCCCGTAC 3264 ||||||||||| || ||| | || |||||| |||||| || |||||| | ||| Sbjct 4837229 GCCAATAACCTCACTTCCACCATCCAGGTGTTTGTGGACTCAGACTATCAGTTAGTATAC 4837288 Query 3265 GT-GCT-CGGGTCGGCGCACCAAGGCTGTCTCCCGCCGTTTCCAGCGGACGTCTTCATGG 3322 | ||| | || | ||| | ||||||||| ||| |||| | || || || |||| Sbjct 4837289 TTAGCTGCTAGT--ACCCACAAGGGCTGTCTCTAGCCTTTTCTGGATGAAGTTTTTATGG 4837346 Query 3323 TCCCTCAGTATGGATACCTCACCCTGAACAACGGAAGTCAAGCGGTGGGACG------CT 3376 | ||||| ||||| || || || || || | || | ||||| ||| | | || Sbjct 4837347 TACCTCAATATGGCTATCTGACTCTCAATGATGGCAACCAAGCACTGGAATGAGCTTCCT 4837406 Query 3377 CATCCTTTTACTGCCTGGAGTACTTCCCTTCGCAGATGCTAAGGACTGGAAATAACTTCC 3436 |||||| | | | |||| || ||| | |||||||| || | | ||||| Sbjct 4837407 TTTCCTTTCATTACTTGGAATATTTCTCCAGTCAGATGCTGCAAACCAGCAGCAACTTTA 4837466 Query 3437 AATTCAGCTATACCTTCGAGGATGTACCTTTTCACAGCAGCTA-CGCTCACAGCCAGAGT 3495 ||| || | || ||| ||| | || |||||| || || || |||||||| Sbjct 4837467 CCTTCTCATACATGTTTGAGAGTGTGCTCTTCCACAGCTCATATTGCCCATAGCCAGAGC 4837526 Query 3496 TTGGATCGCTTGATGAATCCTCTTATTGATCAGTATCTGTACTACCTGAA 3545 | || | || |||||| || |||||||| ||| ||| || ||||| Sbjct 4837527 ATCAATTGGCAGAAGAATCCCCTGATTGATCAATATTTGTGGTATCTGAA 4837576 Score = 161 bits (178), Expect = 3e-36 Identities = 243/338 (72%), Gaps = 7/338 (2%) Strand=Plus/Plus Query 2300 AACCCAAAGCGAACCAACAACACCAGGACAACCGTCGGGGTCTTGTGCT-TCCGGGTTAC 2358 |||| || || || || || || || ||| | | ||||||||| | ||||||| | Sbjct 4836347 AACCTAAGGCCAATCAGCAGCATCAAGACTTCTCATGTGGTCTTGTGTTGTCCGGGT-AT 4836405 Query 2359 AAATACCTCGGACCCGGTAACGGACTCGACAAAGGAGAGCCGGTCAACGAGGCGGACGCG 2418 ||||| ||| | || | ||| | || |||||||||||||| ||||| |||| | | Sbjct 4836406 AAATATCTCTGGCCATGCAACAGTCTTGACAAAGGAGAGCCCATCAACAAGGC--AGTCT 4836463 Query 2419 GCAGCCCTCGAACACGACAAAGCTTACGACCAGCAGCTCAAGGCCGGTGACAACCCGTAC 2478 || || || || ||| ||| || ||| || ||||||| ||||| ||| |||| | ||| Sbjct 4836464 GCTGCTCTTGAGCACAGCAAGGCCTACAACAAGCAGCTTAAGGCGGGT-ACAATTCATAC 4836522 Query 2479 CTCAAGTACAACCACGCCGACGCCGAGTTTCAGGAGCGTCTTCAAGAAGATACGTCTTTT 2538 ||| |||||||||| || | ||| |||||||| | |||| | |||| |||||| Sbjct 4836523 TTCAGGTACAACCACAAGAACACTGAGCTTCAGGAGAAGC-TCAACTACATACTTCTTTT 4836581 Query 2539 GGGGGCAACCTTGGCAGAGCAGTCTTCCAGGCCAAAAAGAGGATCCTTGAGCCTCTTGGT 2598 |||||||| || || ||| || |||||||| |||||| | |||| | | |||| Sbjct 4836582 GGGGGCAAACTCAACAAAGCTGTATTCCAGGCTGAAAAGAAAGTTCTTGCACAT-TTGGC 4836640 Query 2599 CTGGTTGAGGAAGCAGCTAAAACGGCTCCTGGAAAGAA 2636 |||||| | |||| | ||| |||| |||||| ||||| Sbjct 4836641 CTGGTTTAACAAGCTGTTAAGACGGTTCCTGGCAAGAA 4836678 Score = 141 bits (156), Expect = 3e-30 Identities = 202/282 (72%), Gaps = 2/282 (1%) Strand=Plus/Plus Query 3997 AATCATCAGGGGGCCTTACCTGGCATGGTGTGGCAAGATCGTGACGTGTACCTTCAAGGA 4056 ||||| || || |||||| ||||||||||| | || | ||||| || || || | Sbjct 4838005 AATCACCAAGGAATCTTACCCTGCATGGTGTGGAAGGAGAGAGACGTTTATCTGCAGAGT 4838064 Query 4057 CCTATCTGGGCAAAGATTCCTCACACGGATGGACACTTTCATCCTTCTCCTCTGATGGGA 4116 || ||| ||| ||||| || ||||| |||||||||| || | |||||| | ||| || Sbjct 4838065 CCCATCCAGGCCAAGATACCCCACACAAATGGACACTTCCACTCATCTCCTTTCATGAGA 4838124 Query 4117 GGCTTTGGACTGAAACATCCGCCTCCTCAAATCATGATCAAAAATAC-TCCGGTACCGGC 4175 | ||||||| | ||||| || ||||| || || || | |||||||| || | | | ||| Sbjct 4838125 GACTTTGGAGTAAAACAACCTCCTCCACAGATTCTGGTTAAAAATACATCAGCTTCTGGC 4838184 Query 4176 AAATCCTCCGACGACTTTCAGCCCGGCCAAGTTTGCTTCATTTATCACTCAGTACTCCAC 4235 | ||| | || || || || || | ||| ||||| || ||||| || ||||||||| | Sbjct 4838185 -AGTCCAACAACCACCTTTAGTCCTGACAAATTTGCCTCTTTTATAACCCAGTACTCCGC 4838243 Query 4236 TGGACAGGTCAGCGTGGAAATTGAGTGGGAGCTACAGAAAGA 4277 |||||| | ||||| ||| || || || || ||||| Sbjct 4838244 CAATCAGGTCGGAGTGGAGATTCCATGAGAACTGCAAAAAGA 4838285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15007504359835