Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_001829.1 Length=4767 Score E Sequences producing significant alignments: (Bits) Value seq268 181 3e-42 >seq268 Length=5072910 Score = 181 bits (200), Expect = 3e-42 Identities = 250/342 (73%), Gaps = 7/342 (2%) Strand=Plus/Plus Query 2344 CCTAAACCCAAGGCAAATCAACAACATCAGGACAACGCTCGGGGTCTTGTGCT-TCCGGG 2402 || ||||| ||||| ||||| || ||||| ||| | | | ||||||||| | |||||| Sbjct 4836343 CCAAAACCTAAGGCCAATCAGCAGCATCAAGACTTCTCATGTGGTCTTGTGTTGTCCGGG 4836402 Query 2403 TTACAAATACCTCGGACCCGGCAACGGACTCGACAAGGGGGAACCCGTCAACGCAGCGGA 2462 | | ||||| ||| | || ||||| | || ||||| || || ||| ||||| || | Sbjct 4836403 T-ATAAATATCTCTGGCCATGCAACAGTCTTGACAAAGGAGAGCCCATCAACAAGGCAGT 4836461 Query 2463 CGCGGCAGCCCTCGAGCACGACAAGGCCTACGACCAGCAGCTCAAGGCCGGTGACAACCC 2522 | || || || |||||| |||||||||| || ||||||| ||||| ||| |||| | Sbjct 4836462 CT--GCTGCTCTTGAGCACAGCAAGGCCTACAACAAGCAGCTTAAGGCGGGT-ACAATTC 4836518 Query 2523 CTACCTCAAGTACAACCACGCCGACGCGGAGTTCCAGCAGCGGCTTCAGGGCGACACATC 2582 ||| ||| |||||||||| || | ||| | ||| || ||| | | | || || Sbjct 4836519 ATACTTCAGGTACAACCACAAGAACACTGAGCTTCAGGAGAAGCTCAACTAC-ATACTTC 4836577 Query 2583 GTTTGGGGGCAACCTCGGCAGAGCAGTCTTCCAGGCCAAAAAGAGGGTTCTTGAACCTCT 2642 ||||||||||| ||| || ||| || |||||||| |||||| ||||||| || | | Sbjct 4836578 TTTTGGGGGCAAACTCAACAAAGCTGTATTCCAGGCTGAAAAGAAAGTTCTTGCACAT-T 4836636 Query 2643 TGGTCTGGTTGAGCAAGCGGGTGAGACGGCTCCTGGAAAGAA 2684 ||| |||||| | ||||| | | |||||| |||||| ||||| Sbjct 4836637 TGGCCTGGTTTAACAAGCTGTTAAGACGGTTCCTGGCAAGAA 4836678 Score = 131 bits (144), Expect = 5e-27 Identities = 204/285 (72%), Gaps = 20/285 (7%) Strand=Plus/Plus Query 2887 CAAGGTGCCGATGGAGTGGGTAATGCCTCGGGTGATTGGCATTGCGATTCCACCTGGTCT 2946 || |||||||||| | | |||||| | || || |||||||||| |||||| || || Sbjct 4836886 CAGGGTGCCGATGAATTAGGTAATTCTTCAGGAAATTGGCATTGTGATTCCCAATGA-CT 4836944 Query 2947 GAGGGCCACGTCACGACCACCAG---CACCAGAACCTGGGTCTTGCCCACCTACAACAAC 3003 | || || | | ||||| |||| ||||| ||| |||||||||||||||| Sbjct 4836945 G--GGAAACTGAATCATCACCAAGTCCACCCAGGCCTGGCTCT-GCCCACCTACAACAAC 4837001 Query 3004 CACCTCTACAAGCGACTCGGAGAGAGCCTGCAGTCCAACACCTACAACG---------GA 3054 ||||||||| | | | | | | ||| || ||||| |||| | || Sbjct 4837002 CACCTCTACTAACAAATTACTCAAA-CCTCTAG--CAACAATGACAAAGAGTACTTTGGA 4837058 Query 3055 TTCTCCACCCCCTGGGGATACTTTGACTTCAACCGCTTCCACTGCCACTTCTCACCACGT 3114 | | ||||||| ||| |||||||||||| || ||||||||||| |||||||| || | Sbjct 4837059 TACAGCACCCCC-GGGAATACTTTGACTTTAATCGCTTCCACTGACACTTCTCTCCTTGA 4837117 Query 3115 GACTGGCAGCGACTCATCAACAACAACTGGGGCATGCGACCCAAA 3159 ||||||||||||| ||||||||||||| ||| | | |||||||| Sbjct 4837118 GACTGGCAGCGACCCATCAACAACAACAGGGACTTCTGACCCAAA 4837162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15138672059420