Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_002077.1 Length=4718 Score E Sequences producing significant alignments: (Bits) Value seq268 333 8e-88 >seq268 Length=5072910 Score = 333 bits (368), Expect = 8e-88 Identities = 521/744 (70%), Gaps = 20/744 (3%) Strand=Plus/Plus Query 2827 CAATGGCTTCAGGCGGTGGCGCACCAATGGCAGACAATAACGAAGGCGCCGACGGAGTGG 2886 ||||||||||||| ||| | |||||||||| || | ||| | || ||||| | | | | Sbjct 4836845 CAATGGCTTCAGGTGGTAGGGCACCAATGGGTGAAGACAACCAGGGTGCCGATGAATTAG 4836904 Query 2887 GTAATGCCTCAGGAAATTGGCATTGCGATTCCACATGGCTGGGCGACAGAGTCATCACCA 2946 ||||| | ||||||||||||||||| |||||| ||| ||||| || || ||||||||| Sbjct 4836905 GTAATTCTTCAGGAAATTGGCATTGTGATTCCCAATGACTGGGAAACTGAATCATCACCA 4836964 Query 2947 NNNNNNNNNNNNNNNNNNNNNTGCCCACCTACAATAACCACCTCTACAAGCAAATCTCCA 3006 ||||||||||||| |||||||||||| | ||||| Sbjct 4836965 AGTCCACCCAGGCCTGGCTC-TGCCCACCTACAACAACCACCTCTACTAACAAAT----- 4837018 Query 3007 GTGCTTCAACGGGGGCCAGCAACGACAACCACTACTTCGGCTACAGCACCCCCTGGGGGT 3066 | || ||| || ||| ||||| | ||||| || |||||||||||| ||| | Sbjct 4837019 -TACTCAAACCTCTAGCAACAATGACAAAGAGTACTTTGGATACAGCACCCCC-GGGAAT 4837076 Query 3067 ATTTTGATTTCAACAGATTCCACTGCCACTTTTCACCACGTGACTGGCAGCGACTCATCA 3126 | ||||| || || | |||||||| ||||| || || | ||||||||||||| ||||| Sbjct 4837077 ACTTTGACTTTAATCGCTTCCACTGACACTTCTCTCCTTGAGACTGGCAGCGACCCATCA 4837136 Query 3127 ACAACAATTGGGGATTCCGGCCCAAGAGACTCAACTTCAAACTCTTCAACATCCAAGTCA 3186 ||||||| ||| ||| | ||||| | || ||||| || | ||||||| ||||||| Sbjct 4837137 ACAACAACAGGGACTTCTGACCCAAAAAACAAAACTTTAAGC---TCAACATTCAAGTCA 4837193 Query 3187 AGGAGGTCACGACGAATGATGGCGTCACAACCATCGCTAATAACCTTACCAGCACGGTTC 3246 | ||||||| ||| | || || || |||||||| |||||||| || ||| | | Sbjct 4837194 AAGAGGTCATGACCCAAGACAGCACCATGACCATCGCCAATAACCTCACTTCCACCATCC 4837253 Query 3247 AAGTCTTCTCGGACTCGGAGTACCAGCTTCCGTACGTCCTCGGCT-CTGCGCACCAGGGC 3305 | || || |||||| || || ||| | ||| | | ||| | | ||| ||||| Sbjct 4837254 AGGTGTTTGTGGACTCAGACTATCAGTTAGTATAC-TTAGCTGCTAGTACCCACAAGGGC 4837312 Query 3306 TGCCTCCCTCCGTTCCCGGCGGACGTGTTCATGATTCCGCAATACGGCTACCTGACGCTC 3365 || ||| || || | || || || || ||| | || ||||| ||||| ||||| ||| Sbjct 4837313 TGTCTCTAGCCTTTTCTGGATGAAGTTTTTATGGTACCTCAATATGGCTATCTGACTCTC 4837372 Query 3366 AACAATGGCAGCCAAGCCGTGG---GACGTTC---ATCCTTTTACTGCCTGGAATATTTC 3419 || |||||| |||||| ||| || ||| |||||| | | | ||||||||||| Sbjct 4837373 AATGATGGCAACCAAGCACTGGAATGAGCTTCCTTTTCCTTTCATTACTTGGAATATTTC 4837432 Query 3420 CCTTCTCAGATGCTGAGAACGGGCAACAACTTTACCTTCAGCTACACCTTTGAGGAAGTG 3479 | |||||||||| ||| ||| ||||||||||||| |||| |||||| ||| Sbjct 4837433 TCCAGTCAGATGCTGCAAACCAGCAGCAACTTTACCTTCTCATACATGTTTGAGAGTGTG 4837492 Query 3480 CCTTTCCACAGCAGCTA-CGCGCACAGCCAGAGCCTGGACCGGCTGATGAATCCTCTCAT 3538 | ||||||||| || || || ||||||||| | | ||| || |||||| || || Sbjct 4837493 CTCTTCCACAGCTCATATTGCCCATAGCCAGAGCATCAATTGGCAGAAGAATCCCCTGAT 4837552 Query 3539 CGACCAATACCTGTATTACCTGAA 3562 || ||||| ||| || ||||| Sbjct 4837553 TGATCAATATTTGTGGTATCTGAA 4837576 Score = 156 bits (172), Expect = 1e-34 Identities = 313/456 (69%), Gaps = 10/456 (2%) Strand=Plus/Plus Query 2198 GAGCAATAAA-TGACTTAAACCAGGTATGGCTGCCGATGGTTATCTTCCAGATTGGCTCG 2256 || ||||||| | | ||||| || ||||||| |||||||| ||||| | ||| | | Sbjct 4836234 GAACAATAAAATTATTTAAAT-AGACATGGCTG---ATGGTTATTTTCCAAACTGGTTGG 4836289 Query 2257 AGGACAACCTCTCTGAGGGCATTCGCGAGTGGTGGGACTTGAAACCTGGAGCCCCGAAGC 2316 | | |||||| | | | |||||| |||| || |||| || || | Sbjct 4836290 AAATTATTCTCTCTTACAGGTTCTAAGAGTGGCAAAACTTAAAGTCTGGCCTGCCAAAAC 4836349 Query 2317 CCAAAGCCAACCAGCAAAAGCAGGACGACGGCCGGGGTCTGGTGCTTCCTGGCTACAAGT 2376 | || ||||| ||||| | || ||| | | ||||| ||| | | || || || | Sbjct 4836350 CTAAGGCCAATCAGCAGCATCAAGACTTCTCATGTGGTCTTGTGTTGTCCGGGTATAAAT 4836409 Query 2377 ACCTCGGACCCTTCAACGGACTCGACAAGGGGGAGCCCGTCAACGCGGCGGACGCAGCGG 2436 | ||| | || | |||| | || ||||| || |||||| ||||| ||| | | || | Sbjct 4836410 ATCTCTGGCCATGCAACAGTCTTGACAAAGGAGAGCCCATCAACAAGGCAGTCT--GCTG 4836467 Query 2437 CCCTCGAGCACGACAAGGCCTACGACCAGCAGCTCAAAGCGGGTGACAATCCGTACCTGC 2496 | || |||||| |||||||||| || ||||||| || |||||| ||||| | ||| | Sbjct 4836468 CTCTTGAGCACAGCAAGGCCTACAACAAGCAGCTTAAGGCGGGT-ACAATTCATACTTCA 4836526 Query 2497 GGTATAACCACGCCGACGCCGAGTTTCAGGAGCGTCTGCAAGAAGATACGTCTTTTGGGG 2556 |||| |||||| || | ||| |||||||| || ||| | |||| |||||||||| Sbjct 4836527 GGTACAACCACAAGAACACTGAGCTTCAGGAGAAGCT-CAACTACATACTTCTTTTGGGG 4836585 Query 2557 GCAACCTCGGGCGAGCAGTCTTCCAGGCCAAGAAGCGGGTTCTCGAACCTCTCGGTCTGG 2616 |||| ||| ||| || |||||||| | ||| ||||| | || | | || |||| Sbjct 4836586 GCAAACTCAACAAAGCTGTATTCCAGGCTGAAAAGAAAGTTCTTGCACAT-TTGGCCTGG 4836644 Query 2617 TTGAGGAAGGCGCTAAGACGGCTCCTGGAAAGAAAC 2652 || | ||| | |||||||| |||||| ||||||| Sbjct 4836645 TTTAACAAGCTGTTAAGACGGTTCCTGGCAAGAAAC 4836680 Score = 127 bits (140), Expect = 6e-26 Identities = 190/267 (71%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 4026 TTACCTGGCATGGTGTGGCAAGATAGAGACGTGTACCTGCAGGGTCCCATTTGGGCCAAA 4085 ||||| ||||||||||| | || |||||||| || |||||| ||||||| |||||| Sbjct 4838020 TTACCCTGCATGGTGTGGAAGGAGAGAGACGTTTATCTGCAGAGTCCCATCCAGGCCAAG 4838079 Query 4086 ATTCCTCACACAGATGGACACTTTCACCCGTCTCCTCTTATGGGCGGCTTTGGACTCAAG 4145 || || |||||| |||||||||| ||| | |||||| | ||| | | ||||||| | || Sbjct 4838080 ATACCCCACACAAATGGACACTTCCACTCATCTCCTTTCATGAGAGACTTTGGAGTAAAA 4838139 Query 4146 AACCCGCCTCCTCAGATCCTCATCAAAAACACGCCTGTTCCTGCGAATCCTCCGGCGGAG 4205 | || ||||| ||||| || | ||||| || | | | ||| | ||| | | Sbjct 4838140 CAACCTCCTCCACAGATTCTGGTTAAAAATACATCAGCTTCTGGCAGTCCAACAACCACC 4838199 Query 4206 TTTTCAGCT-ACAAAGTTTGCTTCATTCATCACCCAATACTCCACAGGACAAGTGAGTGT 4264 ||| || ||||| ||||| || || || ||||| |||||| | || || | || Sbjct 4838200 TTTAGTCCTGACAAA-TTTGCCTCTTTTATAACCCAGTACTCCGCCAATCAGGTCGGAGT 4838258 Query 4265 GGAAATTGAATGGGAGCTGCAGAAAGA 4291 ||| ||| ||| || ||||| ||||| Sbjct 4838259 GGAGATTCCATGAGAACTGCAAAAAGA 4838285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14981910662355